Contig 001964:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033O14Sequence407009316 (6)ref|XP_010065507.1|9e-39PREDICTED: pinin [Eucalyptus grandis] gb|KCW63027.1| hypothetical protein EUGRSU735001964 (7)gb|KDP43620.1|3e-44hypothetical protein JCGZ_16907 [Jatropha curcas]
JMFS101H07Sequence450001964 (7)gb|KDP43620.1|4e-18hypothetical protein JCGZ_16907 [Jatropha curcas]
JMSF016M05Sequence330001964 (7)
JMSF021O17Sequence615009316 (6)ref|XP_011087796.1|2e-70PREDICTED: pinin [Sesamum indicum]781001964 (7)ref|XP_011087796.1|5e-71PREDICTED: pinin [Sesamum indicum]
JMSF035G19Sequence654009316 (6)ref|XP_011087796.1|4e-84PREDICTED: pinin [Sesamum indicum]720001964 (7)ref|XP_011087796.1|1e-65PREDICTED: pinin [Sesamum indicum]
JMSF036F11Sequence596009316 (6)ref|XP_011087796.1|3e-70PREDICTED: pinin [Sesamum indicum]724001964 (7)ref|XP_011087796.1|2e-61PREDICTED: pinin [Sesamum indicum]
JMSF050P19Sequence591009316 (6)ref|XP_011087796.1|2e-68PREDICTED: pinin [Sesamum indicum]723001964 (7)ref|XP_011087796.1|2e-61PREDICTED: pinin [Sesamum indicum]

Alignment

This contig is upended


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rJMFF033O14+ CTATGCAATTTTATAAGGTTATTTNTAATTTT
                      ____________________________________________________________
consensus CTATGCAATTTTATAAGGTTATTTNTAATTTT
 
. : . : . : . : . : . :
rJMFF033O14+ GGTCCAAAAGTGTGCATATTCACAATTTTATTGATCCAAAGATAAGTTTCCATTCATATG
                      ____________________________________________________________
consensus GGTCCAAAAGTGTGCATATTCACAATTTTATTGATCCAAAGATAAGTTTCCATTCATATG
 
. : . : . : . : . : . :
rJMFF033O14+ CAGAAACGTTGAAGCAGCCAAAAGCCGGCAATGTCCGGCTTTGCATGATTAATGGATTTC
rJMSF050P19+ TGCTGCTAAGGCCAAGGAAAAGAGGAT
rJMSF035G19+ TGCTGCTAAGGCCAAGGAAAAGAGGAT
rJMSF036F11+ TGCTGCTAAGGCCAAGGAAAAGAGGAT
                      ____________________________________________________________
consensus CAGAAACGTTGAAGCAGCCAAAAGCCGGCAATGTGCTGCTAAGGCCAAGGAAAAGAGGAT
 
. : . : . : . : . : . :
rJMFF033O14+ TTGTTAATTGATTCATAACTATACTCNTTTTTATCTTTTTCT-TGATATCCATTCAGGAC
rJMSF050P19+ GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
rJMSF035G19+ GGAATTTTTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
rJMSF021O17+ AGGAC
rJMSF036F11+ GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
                      ____________________________________________________________
consensus GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
 
. : . : . : . : . : . :
rJMFF033O14+ GGAAGCAGTGCCTCCAATATATTACACGTTNGCCAAACCANTGGATGAAGATACTTNTGT
rJMSF050P19+ GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
rJMSF035G19+ GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
rJMSF021O17+ GGAAGCAGTGCCTCCAATATATTACACGTTCGCCGAACCACTGGATGAAGATACTTCTGT
rJMSF036F11+ GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
                      ____________________________________________________________
consensus GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
 
. : . : . : . : . : . :
rJMFF033O14+ ANNTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTTCGAGGGAGGAATT
rJMSF050P19+ AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF035G19+ AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF021O17+ AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF036F11+ AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
                      ____________________________________________________________
consensus AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
 
. : . : . : . : . : . :
rJMFF033O14+ GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF050P19+ GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF035G19+ GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF021O17+ GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF036F11+ GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
                      ____________________________________________________________
consensus GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
 
. : . : . : . : . : . :
rJMFF033O14+ GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACNACAATACTGCCGCGAATCTCCA
rJMSF050P19+ GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF035G19+ GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF021O17+ GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF036F11+ GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
JMFS101H07- GGAGACCAAACAACAATACTGCCGCGAATCTCCA
                      ____________________________________________________________
consensus GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
 
. : . : . : . : . : . :
rJMFF033O14+ CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF050P19+ CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF035G19+ CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF021O17+ CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF036F11+ CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF016M05+ TAGGNTTGANCATGGNCCAANGACCNGAAA
JMFS101H07- CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
                      ____________________________________________________________
consensus CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
 
. : . : . : . : . : . :
rJMFF033O14+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF050P19+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF035G19+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF021O17+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF036F11+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF016M05+ GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATNNTAATGTTGGGGA
JMFS101H07- GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
                      ____________________________________________________________
consensus GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
 
. : . : . : . : . : . :
rJMFF033O14+ GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAN
rJMSF050P19+ GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF035G19+ GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF021O17+ GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF036F11+ GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF016M05+ GGATGACATGATGGATNGATGTACTTGGTGTTGACGNGAACAATCNNAGGGGTGATGAAN
JMFS101H07- GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
                      ____________________________________________________________
consensus GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
 
. : . : . : . : . : . :
rJMFF033O14+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF050P19+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF035G19+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF021O17+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF036F11+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF016M05+ CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
JMFS101H07- CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
                      ____________________________________________________________
consensus CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
 
. : . : . : . : . : . :
rJMFF033O14+ CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTG
rJMSF050P19+ CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF035G19+ CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF021O17+ CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF036F11+ CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF016M05+ CCTCTCATAGTTTAAAGGTNTATACTTATGCTNTGTTGNGTTNTACTGTTTCGATTCGTA
JMFS101H07- CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
                      ____________________________________________________________
consensus CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
 
. : . : . : . : . : . :
rJMSF050P19+ TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF035G19+ TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF021O17+ TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF036F11+ TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF016M05+ TGTACTTTAATTTCCCTTTATTGGTANTTGCCGTANGTTTTACNTCANTAGTTCATTT
JMFS101H07- TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
                      ____________________________________________________________
consensus TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
 
. : . : . : . : . : . :
rJMSF050P19+ TTTGGTATTTATGGACCCATACATTT
rJMSF035G19+ TTTGGTATTTATGGACCCATACATTT
rJMSF021O17+ TTTGGTATTTATGGACCCATAC
rJMSF036F11+ TTTGGTATTTATGGACCCATACATTT
JMFS101H07- TTTGGTATTTATGGACCCATACATTTGTTGAGTTAATTTAAACAGGATTTTCTTTTCTTA
                      ____________________________________________________________
consensus TTTGGTATTTATGGACCCATACATTTGTTGAGTTAATTTAAACAGGATTTTCTTTTCTTA