Contig 001960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001B06Sequence483001960 (4)ref|XP_004239889.1|7e-43PREDICTED: squamosa promoter-binding-like protein 1 [Solanum lycopersicum]
JMFS092E09Sequence624001960 (4)ref|XP_009617582.1|2e-85PREDICTED: squamosa promoter-binding-like protein 12 [Nicotiana tomentosiformis
JMFS097D05Sequence610001960 (4)ref|XP_008223488.1|2e-79PREDICTED: squamosa promoter-binding-like protein 12 [Prunus mume]
JMSF041E11Sequence669003459 (13)emb|CDO98702.1|2e-69unnamed protein product [Coffea canephora]620001960 (4)ref|XP_004239889.1|3e-54PREDICTED: squamosa promoter-binding-like protein 1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041E11- ACACAAGGTACACACGGTCCAAATAACATCTCTAAGTAACATTTCAGCTCTTAT
                      ____________________________________________________________
consensus ACACAAGGTACACACGGTCCAAATAACATCTCTAAGTAACATTTCAGCTCTTAT
 
. : . : . : . : . : . :
JMFN001B06+ AAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
rJMSF041E11- GTAACTACACCTACCAAGATACAACAAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
                      ____________________________________________________________
consensus GTAACTACACCTACCAAGATACAACAAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
 
. : . : . : . : . : . :
JMFN001B06+ GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
rJMSF041E11- GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
                      ____________________________________________________________
consensus GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
 
. : . : . : . : . : . :
JMFN001B06+ TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
rJMSF041E11- TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
                      ____________________________________________________________
consensus TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
 
. : . : . : . : . : . :
JMFN001B06+ AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
rJMSF041E11- AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
                      ____________________________________________________________
consensus AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
 
. : . : . : . : . : . :
JMFN001B06+ CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
rJMSF041E11- CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
                      ____________________________________________________________
consensus CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
 
. : . : . : . : . : . :
JMFN001B06+ CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
rJMSF041E11- CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
JMFS092E09+ GAAGCTCGATGCTTTC
                      ____________________________________________________________
consensus CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
 
. : . : . : . : . : . :
JMFN001B06+ GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
rJMSF041E11- GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
JMFS092E09+ GGTTCTGNGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
                      ____________________________________________________________
consensus GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
 
. : . : . : . : . : . :
JMFN001B06+ TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
rJMSF041E11- TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
JMFS092E09+ TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
                      ____________________________________________________________
consensus TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
 
. : . : . : . : . : . :
JMFN001B06+ TTGGGCGTTAATCCTGTACTGTCGCGTG
rJMSF041E11- TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
JMFS092E09+ TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
                      ____________________________________________________________
consensus TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
 
. : . : . : . : . : . :
rJMSF041E11- GGGTCATTGATTAAGGCGTCCAACAA
JMFS092E09+ GGGTCATTGATTAAGGCGTCCAACAAATTCTCCAAGCCTTTCTGACTGGCTACAATGTGG
                      ____________________________________________________________
consensus GGGTCATTGATTAAGGCGTCCAACAAATTCTCCAAGCCTTTCTGACTGGCTACAATGTGG
 
. : . : . : . : . : . :
JMFS092E09+ AGCGGAGTCAAGCCCCCGATTACTATTGCATCTGGTCTAAATATATAGTGGCCACCATGT
JMFS097D05+ GCCACCATGT
                      ____________________________________________________________
consensus AGCGGAGTCAAGCCCCCGATTACTATTGCATCTGGTCTAAATATATAGTGGCCACCATGT
 
. : . : . : . : . : . :
JMFS092E09+ TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
JMFS097D05+ TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
                      ____________________________________________________________
consensus TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
 
. : . : . : . : . : . :
JMFS092E09+ TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
JMFS097D05+ TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
                      ____________________________________________________________
consensus TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
 
. : . : . : . : . : . :
JMFS092E09+ GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
JMFS097D05+ GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
                      ____________________________________________________________
consensus GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
 
. : . : . : . : . : . :
JMFS092E09+ AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
JMFS097D05+ AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
                      ____________________________________________________________
consensus AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
 
. : . : . : . : . : . :
JMFS092E09+ CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
JMFS097D05+ CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
                      ____________________________________________________________
consensus CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
 
. : . : . : . : . : . :
JMFS092E09+ AGGAGCCA
JMFS097D05+ AGGAGCCAGCCCATATCATGTATAAAGTCCAAAGCTCGGTTTCTGGCTTCTAATTTTTCG
                      ____________________________________________________________
consensus AGGAGCCAGCCCATATCATGTATAAAGTCCAAAGCTCGGTTTCTGGCTTCTAATTTTTCG
 
. : . : . : . : . : . :
JMFS097D05+ GGTTCTTCTTGGGAGTCGGAAGCAGTTTCTGCAACGTCAATGCTGCTCTCTAGTGTACAG
                      ____________________________________________________________
consensus GGTTCTTCTTGGGAGTCGGAAGCAGTTTCTGCAACGTCAATGCTGCTCTCTAGTGTACAG
 
. : . : . : . : . : . :
JMFS097D05+ ATTTCGGAACACACATCCTCCTCCGCAACTATAAACGGGAAGAAACTGCCGCTGAGACCG
                      ____________________________________________________________
consensus ATTTCGGAACACACATCCTCCTCCGCAACTATAAACGGGAAGAAACTGCCGCTGAGACCG
 
. : . : . : . : . : . :
JMFS097D05+ TGATCCTCGACCTCAATGAATCCCCGGCCCGTGACATTAGGTATACTGCAGGGAAAGCTA
                      ____________________________________________________________
consensus TGATCCTCGACCTCAATGAATCCCCGGCCCGTGACATTAGGTATACTGCAGGGAAAGCTA
 
. : . : . : . : . : . :
JMFS097D05+ AGGGACTGGATCTCGTTATGATCGTTCTGATCCACTAATGAATCAGCTTCCACCATATCA
                      ____________________________________________________________
consensus AGGGACTGGATCTCGTTATGATCGTTCTGATCCACTAATGAATCAGCTTCCACCATATCA