Contig 001927:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+                                                    GAGGATGAGCTGCAGAATT
JMFS061A02+                                            AAACGAAAGAGGATGAGCTGCAGAATT
                      ____________________________________________________________
consensus                                              AAACGAAAGAGGATGAGCTGCAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           CCAAATATTGCCAACCGCTGAAATAAGCTCTCTTGTGGTCATTATTTCAGGAGGTTTGCG
JMFS061A02+           CCAAATATTGCCAACCGCTGAAATAAGCTCTCTTGTGGTCATTATTTCAGGAGGTTTGCG
                      ____________________________________________________________
consensus             CCAAATATTGCCAACCGCTGAAATAAGCTCTCTTGTGGTCATTATTTCAGGAGGTTTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           TTCACGTTCAGCAATCTTGTTATTTTGCTTCTTATTCTCTGATGAAATGGTGGCATAGTT
JMFS061A02+           TTCACGTTCAGCAATCTTGTTATTTTGCTTCTTATTCTCTGATGAAATGGTGGCATAGTT
                      ____________________________________________________________
consensus             TTCACGTTCAGCAATCTTGTTATTTTGCTTCTTATTCTCTGATGAAATGGTGGCATAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           TTCACGATCGGAATCAGCAAGTTCAAAGAACGCCCCCTCAAGTAGATTACACCTGTATTT
JMFS061A02+           TTCACGATCGGAATCAGCAAGTTCAAAGAACGCCCCCTCAAGTAGATTACACCTGTATTT
                      ____________________________________________________________
consensus             TTCACGATCGGAATCAGCAAGTTCAAAGAACGCCCCCTCAAGTAGATTACACCTGTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           GGTTGGCAGTTTGTCGCCCTTTGGCGGCTGATTGCCCCAAGCCATTTTATCACAAAAAAG
JMFS061A02+           GGTTGGCAGTTTGTCGCCCTTTGGCGGCTGATTGCCCCAAGCCATTTTATCACAAAAAAG
                      ____________________________________________________________
consensus             GGTTGGCAGTTTGTCGCCCTTTGGCGGCTGATTGCCCCAAGCCATTTTATCACAAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           TTGAGGTAAGGAATGGAAGTGCAACAGCAACGTGGATCTTCAATTTGCCAAAAACTTCAA
JMFS061A02+           TTGAGGTAAGGAATGGAAGTGCAACAGCAACGTGGATCTTCAATTTGCCAAAAACTTCAA
                      ____________________________________________________________
consensus             TTGAGGTAAGGAATGGAAGTGCAACAGCAACGTGGATCTTCAATTTGCCAAAAACTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           ATCTCTCATAGCTAGGATGGGTTCAGCTAGCTACATTGTGCAAACACCATCCCCATTTCA
JMFS061A02+           ATCTCTCATAGCTAGGATGGGTTCAGCTAGCTACATTGTGCAAACACCATCCCCATTTCA
                      ____________________________________________________________
consensus             ATCTCTCATAGCTAGGATGGGTTCAGCTAGCTACATTGTGCAAACACCATCCCCATTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           AGATTTGAGCTTTTCTGATCCAAAACACAACACCCAATCCAAACTCTTGCTCTGTGGCAT
JMFS061A02+           AGATTTGAGCTTTTCTGATCCAAAACACAACACCCAATCCAAACTCTTGCTCTGTGGCAT
                      ____________________________________________________________
consensus             AGATTTGAGCTTTTCTGATCCAAAACACAACACCCAATCCAAACTCTTGCTCTGTGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           TCGCAGCATCAAAATCAATCCAATCCAAGAGTGAGTGCATACAGAAAAATACCCAGAATT
JMFS061A02+           TCGCAGCATCAAAATCAATCCAATCCAAGAGTGAGTGCATACAGAAAAATACCCAGAATT
                      ____________________________________________________________
consensus             TCGCAGCATCAAAATCAATCCAATCCAAGAGTGAGTGCATACAGAAAAATACCCAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           CAGAAGGGAAAATGACTGACCAAAATTGACTCCTTGGCAGCTAAAACCAGCGCGACACAG
JMFS061A02+           CAGAAGGGAAAATGACTGACCAAAATTGACTCCTTGGCAGCTAAAACCAGCGCGACACAG
                      ____________________________________________________________
consensus             CAGAAGGGAAAATGACTGACCAAAATTGACTCCTTGGCAGCTAAAACCAGCGCGACACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061A03+           ATTCTCCGCGTCATTTTCCTGGGAAAATGGGTATGGAAATTGCCTGGGAAGAATAGGGTT
JMFS061A02+           ATTCTCCGCGTCATTTTCCTGGGAAAATGGGTATGGAAATTGCCTGGGAAGAATAGGGTT
                      ____________________________________________________________
consensus             ATTCTCCGCGTCATTTTCCTGGGAAAATGGGTATGGAAATTGCCTGGGAAGAATAGGGTT