Contig 001879:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029C23Sequence582001879 (9)ref|XP_009786487.1|7e-44PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR741012532 (5)ref|XP_009786487.1|6e-11PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFF046E03Sequence627001879 (9)ref|XP_009786487.1|2e-44PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR605012532 (5)
JMFS004C12Sequence197001879 (9)
JMFS008E08Sequence623001879 (9)ref|XP_009786487.1|2e-57PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS041G05Sequence614001879 (9)ref|XP_009786487.1|4e-56PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS068G01Sequence618001879 (9)ref|XP_009786487.1|2e-58PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS072G07Sequence627001879 (9)ref|XP_009786487.1|4e-59PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMSF009M02Sequence390001879 (9)687012532 (5)
JMSF013D21Sequence231001879 (9)737012532 (5)ref|XP_009786487.1|3e-12PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS008E08+ TGATCTCACTTTGAT
JMFS068G01+ TGATCTCACTTTGAT
JMFS072G07+ CGTGATCTCACTTTGAT
JMFS041G05+ GAT
                      ____________________________________________________________
consensus CGTGATCTCACTTTGAT
 
. : . : . : . : . : . :
JMFS008E08+ CTGTTTCAGGAAGCAATGTTATTTGTGCATACACNTCATCTGTCTCTGTTTCGGCCTGAA
JMFS068G01+ CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFS072G07+ CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFS041G05+ CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFF046E03+ TGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFF029C23+ GCCTGAA
                      ____________________________________________________________
consensus CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
 
. : . : . : . : . : . :
JMFS008E08+ GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS068G01+ GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS072G07+ GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS041G05+ GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFF046E03+ GACGAACATTCAGAACTCTGCACAGAATNTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFF029C23+ GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
                      ____________________________________________________________
consensus GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
 
. : . : . : . : . : . :
JMFS008E08+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS068G01+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS072G07+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS041G05+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFF046E03+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFF029C23+ GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
                      ____________________________________________________________
consensus GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
 
. : . : . : . : . : . :
JMFS008E08+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS068G01+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS072G07+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS041G05+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFF046E03+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFF029C23+ AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
                      ____________________________________________________________
consensus AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
 
. : . : . : . : . : . :
JMFS008E08+ CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS068G01+ CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS072G07+ CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS041G05+ CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFF046E03+ CCTTGTACAAAGGATCATTTGAAGCCTCTGG-TGAGGCCCTCCAGTAAAATGATTTGCAG
JMFF029C23+ CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMSF009M02+ ACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
                      ____________________________________________________________
consensus CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
 
. : . : . : . : . : . :
JMFS008E08+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS068G01+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS072G07+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS041G05+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFF046E03+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFF029C23+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMSF009M02+ CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
                      ____________________________________________________________
consensus CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
 
. : . : . : . : . : . :
JMFS008E08+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS068G01+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS072G07+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS041G05+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFF046E03+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFF029C23+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMSF009M02+ TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMSF013D21+ ACGCTTCTTAAATAT
                      ____________________________________________________________
consensus TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
 
. : . : . : . : . : . :
JMFS008E08+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS068G01+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS072G07+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS041G05+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFF046E03+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFF029C23+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMSF009M02+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMSF013D21+ TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS004C12+ GTCATTTCCACACCCC
                      ____________________________________________________________
consensus TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
 
. : . : . : . : . : . :
JMFS008E08+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS068G01+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS072G07+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS041G05+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFF046E03+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFF029C23+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMSF009M02+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMSF013D21+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS004C12+ CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
                      ____________________________________________________________
consensus CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
 
. : . : . : . : . : . :
JMFS008E08+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS068G01+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS072G07+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS041G05+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFF046E03+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFF029C23+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMSF009M02+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMSF013D21+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS004C12+ TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
                      ____________________________________________________________
consensus TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
 
. : . : . : . : . : . :
JMFS008E08+ CGGTCTTT
JMFS068G01+ CGG
JMFS072G07+ CGGTCTTTGC
JMFS041G05+ CGGTCTTTGCC
JMFF046E03+ CGGTCTTTGCCTGGTGGGAGCCGACAGTA
JMFF029C23+ CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC
JMSF009M02+ CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC
JMSF013D21+ CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC
JMFS004C12+ CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTACAATTTCTCTCTCATAATATGCGTGT
                      ____________________________________________________________
consensus CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTACAATTTCTCTCTCATAATATGCGTGT