| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011K12 | Sequence | 561 | 020574 | ref|XP_006343829.1| | 1e-75 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Sol | 699 | 001819 (5) | emb|CDP12182.1| | 4e-93 | unnamed protein product [Coffea canephora] |
| JMFN011I09 | Sequence | 592 | 001819 (5) | ref|XP_009590113.1| | 1e-45 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic | |||||
| JMSF021A15 | Sequence | 683 | 002208 (3) | emb|CDP12182.1| | 3e-100 | unnamed protein product [Coffea canephora] | 788 | 001819 (5) | ref|XP_009590113.1| | 1e-103 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic |
| JMSF022A15 | Sequence | 641 | 002208 (3) | emb|CDP12182.1| | 3e-90 | unnamed protein product [Coffea canephora] | 384 | 001819 (5) | emb|CDP12182.1| | 3e-62 | unnamed protein product [Coffea canephora] |
| JMSF035O13 | Sequence | 631 | 002208 (3) | emb|CDP12182.1| | 7e-87 | unnamed protein product [Coffea canephora] | 752 | 001819 (5) | ref|XP_009590113.1| | 3e-93 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic |
This contig is upended
. : . : . : . : . : . :
rJMFF011K12+ TGGTTATGGAGAGATTGGATCATGCGATGAAACG
rJMSF021A15+ TGTCATTGGGAAGGCTCTGGTGTACTGGTTATGGAAAGCTTGGAGCACGCAATGAAACG
rJMSF035O13+ CGCAATGAAACG
____________________________________________________________
consensus TGTCATTGGGAAGGCTCTGGTGTACTGGTTATGGAGAGCTTGGATCACGCAATGAAACG
. : . : . : . : . : . :
rJMFF011K12+ AGGGGCTAATGTTATTGCAGAGTACTTGGGAGGGGCGACAACGTGTGATGCTCATCACAT
rJMSF021A15+ AGGCGCCAATATCATTGCAGAGTACTTGGGAGGCGCAGTCACCTGTGATGCTCATCACAT
rJMSF035O13+ AGGCGCCAATATCATTGCAGAGTACNTGGGAGGCGCAGTCACCTGTGATGCTCATCACAT
____________________________________________________________
consensus AGGCGCCAATATCATTGCAGAGTACTTGGGAGGCGCAGTCACCTGTGATGCTCATCACAT
. : . : . : . : . : . :
rJMFF011K12+ GACGGAACCTCGGACAGATGGTCTTGGTGTTTCATCTTGCATAACCAAGAGCTTGGAAGA
rJMSF021A15+ GACTGATCCCCGTTCAGATGGACTTGGCGTTTCGTCCTGCATAACCAAGAGCCTAGACGA
rJMSF022A15+ TAACCAAGAGCCTAGACGA
rJMSF035O13+ GACTGATCCCCGTTCAGATGGACTTGGCGTTTCGTCCTGCATAACCAAGAGCCTAGACGA
____________________________________________________________
consensus GACTGATCCCCGTTCAGATGGACTTGGCGTTTCGTCCTGCATAACCAAGAGCCTAGACGA
. : . : . : . : . : . :
rJMFF011K12+ TGCTGGTGTTTCTCCTGAAGAGGTGAACTACATCAATGCTCATGCAACATCAACCGTTGC
rJMSF021A15+ TGCTGGCGTTTCTGCTGAAGAGGTGAACTACATTAATGCTCATGCAACATCAACTCTTGC
rJMSF022A15+ TGCTGGCGTTTNTGNTGAAGAGGTGAANTACATTAATGCTCATGCAACATCAACTCTTGC
rJMSF035O13+ TGCTGGCGTTTCTGCTGAAGAGGTGAACTACATTAATGCTCATGCAACATCAACTCTTGC
____________________________________________________________
consensus TGCTGGCGTTTCTGCTGAAGAGGTGAACTACATTAATGCTCATGCAACATCAACTCTTGC
. : . : . : . : . : . :
rJMFF011K12+ TGGAGACATAGTTGAGGTTAATGCTATTAAGAAGGTGTTCAAGGATACAAGTGAGATCAA
rJMSF021A15+ TGGAGATTTGGCTGAGGTTAGTGCTATCAAGAGAGTCTTCAAGGATACAAGTGAAATTAA
rJMSF022A15+ NGGAGATTTGGCTGAGGTTAGTGCTATCAAGAGAGTCTTCAAGGATACAAGTGAAATTAA
rJMSF035O13+ TGGAGATTTGGCTGAGGTTAGTGCTATCAAGAGAGTCTTCAAGGATACAAGTGAAATTAA
JMFN011I09- TTTGGCTGAGGTTAGTGCTATCAAGAGAGTCTTCAAGGATACAAGTGAAATTAA
____________________________________________________________
consensus TGGAGATTTGGCTGAGGTTAGTGCTATCAAGAGAGTCTTCAAGGATACAAGTGAAATTAA
. : . : . : . : . : . :
rJMFF011K12+ AATGAATGGAACCAAGTCACTGATTGGTCATGGACTTGGGGCTTNTGGTGGGCTTGAAGC
rJMSF021A15+ AATGAATGGAACCAAGTCTATGATTGGGCATGGACTCGGGGCTGCTGGCGGGCTGGAAGC
rJMSF022A15+ AATGAATGGAACCAAGTCTATGATTGGGCATGGACTCGGGGCTGCTGGCGGGCTGGAAGC
rJMSF035O13+ AATGAATGGAACCAAGTCTATGATTGGGCATGGACTCGGGGCTGCTGGCGGGCTGGAAGC
JMFN011I09- AATGAATGGAACCAAGTCTATGATTGGGCATGGACTCGGGGCTGCTGGCGGGCTGGAAGC
____________________________________________________________
consensus AATGAATGGAACCAAGTCTATGATTGGGCATGGACTCGGGGCTGCTGGCGGGCTGGAAGC
. : . : . : . : . : . :
rJMFF011K12+ TATTGCAACCATCAAGGCAATCACCACAGGATGGTTACACCCAACTATTAACCAATATAA
rJMSF021A15+ CATTGCAACAATTAAAGCAATCACGACGGGCTGGCTACATCCAACTATTAACCAATATGA
rJMSF022A15+ CATTGCAACAATTAAAGCAATCACGACGGGCTGGCTACATCCAACTATTAACCAATATGA
rJMSF035O13+ CATTGCAACAATTAAAGCAATCACGACGGGCTGGCTACATCCAACTATTAACCAATATGA
JMFN011I09- TATTGCAACAATTAAAGCAATCACGACGGGCTGGCTACATCCAACTATTAACCAATATGA
____________________________________________________________
consensus TATTGCAACAATTAAAGCAATCACGACGGGCTGGCTACATCCAACTATTAACCAATATGA
. : . : . : . : . : . :
rJMFF011K12+ TTTGGAGCCAGAAGTTACAATCGACACCGTTCCAAATGTCAAGAAACAACACCAAGTTAA
rJMSF021A15+ CTTGGAGCCTGAGGTTACTATTGACACTGTCCCAAATGTCAAGAAACAGCATGAAGTTAA
rJMSF022A15+ CTTGGAGCCTGAGGTTACTATTGACACTGTCCCAAATGTCAAGAAACAGCATGAAGTTAA
rJMSF035O13+ CTTGGAGCCTGAGGTTACTATTGACACTGTCCCAAATGTCAAGAAACAGCATGAAGTTAA
JMFN011I09- CTTGGAGCCTGAGGTTACTATTGACACTGTCCCAAATGTCAAGAAACAGCATGAAGTTAA
____________________________________________________________
consensus CTTGGAGCCTGAGGTTACTATTGACACTGTCCCAAATGTCAAGAAACAGCATGAAGTTAA
. : . : . : . : . : . :
rJMFF011K12+ CGTTGCTATTTCCAACTCATTTGGTTTTGGTGGGCATAA
rJMSF021A15+ TGTTGCTATCTCCAACTCATTTGGCTTTGGTGGGCATAATTCGGTTGTCGTGTTTGCGCC
rJMSF022A15+ TGTTGCTATCTCCAACTCATTTGGCTTTGGTGGGCATAATTCGGTTGTCGTGTTTGCGCC
rJMSF035O13+ TGTTGCTATCTCCAACTCATTTGGCTTTGGTGGGCATAATTCGGTTGTCGTGTTTGCGCC
JMFN011I09- TGTTGCTATCTCCAACTCATTTGGCTTTGGTGGGCATAATTCGGTTGTCGTGTTTGCGCC
____________________________________________________________
consensus TGTTGCTATCTCCAACTCATTTGGCTTTGGTGGGCATAATTCGGTTGTCGTGTTTGCGCC
. : . : . : . : . : . :
rJMSF021A15+ TTTCAACCCCTAAATAGATTTAAGGGAAATCACTCTTTGTCTTGTGCCATTTGTTAGGTT
rJMSF022A15+ TTTCA
rJMSF035O13+ TTTCAACCCCTAAATAGATTTAAGGGAAATCACTCTTTGTCTTGTGCCATTTGTTAGGTT
JMFN011I09- TTTCAACCCCTAAATAGATTTAAGGGAAATCACTCTTTGTCTTGTGCCATTTGTTAGGTT
____________________________________________________________
consensus TTTCAACCCCTAAATAGATTTAAGGGAAATCACTCTTTGTCTTGTGCCATTTGTTAGGTT
. : . : . : . : . : . :
rJMSF021A15+ ATTCCTCTACACCAGAAACTCTATGTCAGTTCACTTAGAATCTTTACAATTTTCTGAAAT
rJMSF035O13+ ATTCCTCTACACCAGAAACTCTATGTCAGTTCACTTAGAATCTTTACAATTTTCTGAAAT
JMFN011I09- ATTCCTCTACACCAGAAACTCTATGTCAGTTCACTTAGAATCTTTACAATTTTCTGAAAT
____________________________________________________________
consensus ATTCCTCTACACCAGAAACTCTATGTCAGTTCACTTAGAATCTTTACAATTTTCTGAAAT
. : . : . : . : . : . :
rJMSF021A15+ ATTGAGGTTTGTTTGGGGAACATTGTCCCTTGTACACTCCTTCAGACGTAGGATCAAAAT
rJMSF035O13+ ATTGAGGTTTGTTTGGGGAACATTGTCCCTTGTACACTCTTTCAGAC-TAGGATCAAAAT
JMFN011I09- ATTGAGGTTTGTTTGGGGAACATTGTCCCTTGTACACTCTTTCAGAC-TAGGATCAAAAT
____________________________________________________________
consensus ATTGAGGTTTGTTTGGGGAACATTGTCCCTTGTACACTCTTTCAGAC-TAGGATCAAAAT
. : . : . : . : . : . :
rJMSF021A15+ AATGTNGTTTTATGCAACTTCTTAACAAGCTAGAAACCAATCCTGTCAAAC
rJMSF035O13+ AATGTTGTTTTATGCAACTTCTTAACAAGCTAGAAACCAATCCTGTCAAACCAAGTCTTC
JMFN011I09- AATGTTGTTTTATGCAACTTCTTAACAAGCTAGAAACCAATCCTGTCAAA-CAAGTCTTC
____________________________________________________________
consensus AATGTTGTTTTATGCAACTTCTTAACAAGCTAGAAACCAATCCTGTCAAACCAAGTCTTC
. : . : . : . : . : . :
rJMSF035O13+ TGCAATCTGTAATTCATCTTT
JMFN011I09- TGCAATCTGTAATTCATCTTTTGTGTTTATTACTCTTCAATAAACATTTTGGTCTTTGCT
____________________________________________________________
consensus TGCAATCTGTAATTCATCTTTTGTGTTTATTACTCTTCAATAAACATTTTGGTCTTTGCT