Contig 001815:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J22Sequence487001815 (6)ref|XP_009783395.1|3e-85PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]683001815 (6)ref|XP_009783395.1|3e-88PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]
JMFF029L05Sequence497001815 (6)ref|XP_009783395.1|1e-84PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]688001815 (6)ref|XP_009783395.1|7e-88PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]
JMFN008J01Sequence627001815 (6)ref|XP_009783395.1|2e-88PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]
JMFN009A14Sequence682001815 (6)ref|XP_009783395.1|4e-88PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN009A14+ AAAATTAAGCANCA
                      ____________________________________________________________
consensus AAAATTAAGCANCA
 
. : . : . : . : . : . :
JMFN009A14+ AGNAGGTTCTAATCATATTACTGACCATAAACTGAGAAACATAAATAAGATTGATTGGGT
JMFN008J01+ GAGAAACATAAATAAGATTGATTGGGT
                      ____________________________________________________________
consensus AGNAGGTTCTAATCATATTACTGACCATAAACTGAGAAACATAAATAAGATTGATTGGGT
 
. : . : . : . : . : . :
JMFN009A14+ CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
rJMFF001J22- TTCA
rJMFF029L05- TTCA
JMFN008J01+ CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
                      ____________________________________________________________
consensus CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
 
. : . : . : . : . : . :
JMFN009A14+ CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
rJMFF001J22- CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
rJMFF029L05- CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
JMFF029L05+ CTCTTCCTCCTCAGGTGTGAAGTCATT
JMFF001J22+ TCCTCAGGTGTGAAGTCATT
JMFN008J01+ CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
                      ____________________________________________________________
consensus CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
 
. : . : . : . : . : . :
JMFN009A14+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
rJMFF001J22- TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
rJMFF029L05- TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFF029L05+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFF001J22+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFN008J01+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
                      ____________________________________________________________
consensus TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
 
. : . : . : . : . : . :
JMFN009A14+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
rJMFF001J22- TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
rJMFF029L05- TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFF029L05+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFF001J22+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFN008J01+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
                      ____________________________________________________________
consensus TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
 
. : . : . : . : . : . :
JMFN009A14+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
rJMFF001J22- ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
rJMFF029L05- ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFF029L05+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFF001J22+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFN008J01+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
                      ____________________________________________________________
consensus ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
 
. : . : . : . : . : . :
JMFN009A14+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
rJMFF001J22- CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
rJMFF029L05- CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFF029L05+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFF001J22+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFN008J01+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
                      ____________________________________________________________
consensus CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
 
. : . : . : . : . : . :
JMFN009A14+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
rJMFF001J22- CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
rJMFF029L05- CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFF029L05+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFF001J22+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFN008J01+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
                      ____________________________________________________________
consensus CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
 
. : . : . : . : . : . :
JMFN009A14+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
rJMFF001J22- TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
rJMFF029L05- TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFF029L05+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFF001J22+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFN008J01+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
                      ____________________________________________________________
consensus TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
 
. : . : . : . : . : . :
JMFN009A14+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATC
rJMFF001J22- CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
rJMFF029L05- CTCGCCGTCAGCACCTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFF029L05+ CTCGCCGTCAGCACCTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFF001J22+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFN008J01+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
                      ____________________________________________________________
consensus CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
 
. : . : . : . : . : . :
rJMFF001J22- TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGC
rJMFF029L05- TCTGT-AACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAAT
JMFF029L05+ TCTGT-AACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAAT
JMFF001J22+ TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGC
JMFN008J01+ TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAATGTAGAGAGAG
                      ____________________________________________________________
consensus TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAATGTAGAGAGAG