Contig 001783:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047L24Sequence584001783 (9)ref|XP_009804387.1|4e-12PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest354001783 (9)
JMFN028P12Sequence595001783 (9)ref|XP_009804387.1|1e-14PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest
JMSF004G10Sequence460001783 (9)emb|CBI32867.3|2e-12unnamed protein product [Vitis vinifera]
JMSF004G12Sequence270004541 (24)ref|XP_009616586.1|1e-16PREDICTED: auxin-repressed 12.5 kDa protein-like [Nicotiana tomentosiformis]132001783 (9)ref|XP_009804387.1|2e-04PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest
JMSF021O18Sequence661001783 (9)ref|XP_009804387.1|2e-14PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest525001783 (9)ref|XP_006339242.1|3e-15PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Solanum tuberosum]
JMSF039C03Sequence694001783 (9)ref|XP_009804387.1|2e-14PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest655001783 (9)ref|XP_009804387.1|2e-14PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic-like [Nicotiana sylvest

Alignment

This contig is upended


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rJMFF047L24-                   ACCCTGGAGAGNTTTTTTTTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus                      ACCCTGGAGAGNTTTTTTTTTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNN
 
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rJMFF047L24-          XAACCAGAGAAAGATTAAGCAATTTTCTCAAGAAATAATATAAACAAATACAATTGATTG
rJMSF039C03-                                                                 GATTG
rJMSF021O18-                                                                 GATTG
JMSF039C03+               CAGAGAAAGATTAAGCAATTTTCTCAAGAAATAATATAAACAAATACAATTGATTG
JMSF021O18+                                                                      G
                      ____________________________________________________________
consensus             NAACCAGAGAAAGATTAAGCAATTTTCTCAAGAAATAATATAAACAAATACAATTGATTG
 
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rJMFF047L24-          TATTAGCAGTAAAAAAGTCAGGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
rJMSF039C03-          TATTAGCAGTAGAAAACTCAAGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
rJMSF021O18-          TATTAGCAGTAGAAAACTCAAGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
JMSF039C03+           TATTAGCAGTAGAAAACTCAAGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
JMFN028P12+                                                         AAAGAATTTATCTA
JMSF021O18+           TATTAGCAGTAGAAAACTCAAGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
                      ____________________________________________________________
consensus             TATTAGCAGTAGAAAACTCAAGTACAGATATCTGGTAGTACAACACAAAGAATTTATCTA
 
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rJMFF047L24-          GTTCCTTTCCATTTTAAATGCATATTGAATGAAAGGGAGATGACCCAAACAAAATGGGAA
rJMSF039C03-          GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
rJMSF021O18-          GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
JMSF039C03+           GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
JMFN028P12+           GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
JMSF021O18+           GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
JMFF047L24+                          AGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
                      ____________________________________________________________
consensus             GTTCCTTTCCATTTTAGATGCATATTGAATGAAAGGGAGATGACACAAACAAAATGGGAA
 
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rJMFF047L24-          GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGGGGCCATCTCCCAATTTTCC
rJMSF039C03-          GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
rJMSF021O18-          GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
JMSF004G10+                                                                     CC
JMSF039C03+           GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
JMFN028P12+           GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
JMSF021O18+           GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
JMFF047L24+           GAAAAGGCTAAACATTCTTGTTC-TTTTCAACTTGGATGGTGGCCATCTCCCAATTTTCC
                      ____________________________________________________________
consensus             GAAAAGGCTAAACATTCTTGTTCTTTTTCAACTTGGATGGTGGCCATCTCCCAATCTTCC
 
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rJMFF047L24-          TTAAATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
rJMSF039C03-          TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
rJMSF021O18-          TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
JMSF004G10+           TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
JMSF039C03+           TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
JMFN028P12+           TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
JMSF021O18+           TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
JMFF047L24+           TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
                      ____________________________________________________________
consensus             TTAGATGGCGTTTCCTGAGCAGCCGCTTTCTTCTCAGTCTAATTTTCTTCGCGATTTTCA
 
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rJMFF047L24-          TCC                                                         
rJMSF039C03-          TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
rJMSF021O18-          TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
JMSF004G10+           TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
JMSF039C03+           TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
JMFN028P12+           TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
JMSF021O18+           TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
JMFF047L24+           TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
                      ____________________________________________________________
consensus             TCCTCGTTTTCTGGTCAAGCTTTTCCTGGAGCTTGGACTCCAAAGGGAGGTTCTCAACGG
 
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rJMSF039C03-          ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
rJMSF021O18-          ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
JMSF004G10+           ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
JMSF039C03+           ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
JMFN028P12+           ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
JMSF021O18+           ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
JMFF047L24+           ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
                      ____________________________________________________________
consensus             ACACATTTTCCTCTTTACTTTCTGAGGGAGATTCAGGATTGTTGTCAGCGCTCACACCAT
 
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rJMSF039C03-          CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
rJMSF021O18-          CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
JMSF004G10+           CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
rJMSF004G12-            ACATCANAAGTNGCATTCACAACCAATGCATCTCGNTCTTTGATAATATACGGGGCAT
JMSF039C03+           CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
JMFN028P12+           CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
JMSF021O18+           CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
JMFF047L24+           CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
                      ____________________________________________________________
consensus             CAACATCAGAAGTTGCATTCACAACCAATGCATCTCGTTCTTTGATAATATACGGGGCAT
 
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rJMSF039C03-          GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
rJMSF021O18-          GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
JMSF004G10+           GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
rJMSF004G12-          GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCNTTACAAGTTTTACCAAACCTCG
JMSF039C03+           GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
JMFN028P12+           GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
JMSF021O18+           GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
JMFF047L24+           GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
                      ____________________________________________________________
consensus             GAATTCGGTGATTGATGTACGATCTTGGTGCCAAACCATTACAAGTTTTACCAAACCTCG
 
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rJMSF039C03-          AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
rJMSF021O18-          AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGA                          
JMSF004G10+           AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
rJMSF004G12-          AGAAAGGATGAGCA                                              
JMSF039C03+           AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
JMFN028P12+           AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
JMSF021O18+           AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
JMFF047L24+           AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
                      ____________________________________________________________
consensus             AGAAAGGATGAGCAGCGAGCAAAGAGGAAGATGAAGAAGAAGAAGAAGAATGCAATGAGA
 
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rJMSF039C03-          GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
JMSF004G10+           GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
JMSF039C03+           GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
JMFN028P12+           GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
JMSF021O18+           GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
JMFF047L24+           GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
                      ____________________________________________________________
consensus             GAGAAGCGACGGTTGGAGTGGCGGTGAAGAGGAGGAGCGCCGTAGCCATCTCTTCTGGAT
 
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rJMSF039C03-          AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGC                       
JMSF004G10+           AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCG                        
JMSF039C03+           AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGC                       
JMFN028P12+           AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGC                       
JMSF021O18+           AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGCACTGGAAATATGAATCCACACCC
JMFF047L24+           AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGCACTGGAAATATGAATCCACACCC
                      ____________________________________________________________
consensus             AAGAGCTTAGTTAGAGCCTTCTTTTTTTACAGTCCGCACTGGAAATATGAATCCACACCC