Contig 001778:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046O19Sequence623001778 (4)ref|XP_009624361.1|3e-49PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]578001778 (4)ref|XP_009620406.1|4e-54PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis]
JMFN015I19Sequence627001778 (4)gb|ABB77426.1|1e-50Skp1-like protein 1 [Petunia integrifolia subsp. inflata] gb|ACA61786.1| SKP1-li
JMFN025A13Sequence544001778 (4)ref|XP_009624361.1|3e-57PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF046O19- AAGAAAAG
                      ____________________________________________________________
consensus AAGAAAAG
 
. : . : . : . : . : . :
rJMFF046O19- GGTATCACATACATTATATTATTATGATAACAAAGAGGATTTATTAGTAGGATACATGCA
                      ____________________________________________________________
consensus GGTATCACATACATTATATTATTATGATAACAAAGAGGATTTATTAGTAGGATACATGCA
 
. : . : . : . : . : . :
JMFN025A13+ TTCACTCATA
rJMFF046O19- TAGCAAACCACCATTAAAGCAAGCAAACAGGCAATTAACAGAATTGAAATTTTACTCAAA
JMFN015I19+ TTCACTCAAA
                      ____________________________________________________________
consensus TAGCAAACCACCATTAAAGCAAGCAAACAGGCAATTAACAGAATTGAAATTTCACTCAAA
 
. : . : . : . : . : . :
JMFN025A13+ TGCCCAAGCATTCTCCCTACGGAT---CTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
rJMFF046O19- TGCCCAAGCATTCTCCCTAGGGATCTCCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
JMFN015I19+ TCCCTAAGCATTTTCCCTACGGA---CCTCTTCTTCTTCCTCTGGTATGAAGGCATTTTG
JMFF046O19+ CCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
                      ____________________________________________________________
consensus TGCCCAAGCATTCTCCCTACGGAT--CCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
 
. : . : . : . : . : . :
JMFN025A13+ GATATTGAAAATTTTGCTGATCTCCTCTGGTGTCTTCCCCTTGATCATATCAGCAACAGT
rJMFF046O19- GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
JMFN015I19+ GAGTTTGAAAAATTTGCGGATCTCCTCTGGTGTCTTCCCCTTGATCATATCAGCAACAAT
JMFF046O19+ GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
                      ____________________________________________________________
consensus GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
 
. : . : . : . : . : . :
JMFN025A13+ TTGACAGGTAAGATCAAGCAAACTATTGATGTTGAGGAAATTAGCAGCTAGAACAAGATC
rJMFF046O19- TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
JMFN015I19+ TAGACAGGTAAGATCGAGCAAGCTCTTGATGTTGAGGAAATTAGCAGCCAGGATGAGATC
JMFF046O19+ TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
                      ____________________________________________________________
consensus TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
 
. : . : . : . : . : . :
JMFN025A13+ AAACAACGTTTTGTGGTCAACTTTGATGAAATTAGCATCGAAGGCCTTGAGATCGTCGGA
rJMFF046O19- AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
JMFN015I19+ AAACAGCGTTTCCTGGTCAACTTTGAAGAAATCAGCATCGAAGGCCTTGAGATCGTCGGA
JMFF046O19+ AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
                      ____________________________________________________________
consensus AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
 
. : . : . : . : . : . :
JMFN025A13+ ATCAATGGTCCCCTT---CGCGGCCTCAACGTGGCATTTGCAGTAGTCTATAACCATGCC
rJMFF046O19- ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
JMFN015I19+ ATCAATGGTCCCCTTCGCGGCGGCCTCGACGTGGCGTTTGCAGTACTCTATAACCATGCC
JMFF046O19+ ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
                      ____________________________________________________________
consensus ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
 
. : . : . : . : . : . :
JMFN025A13+ TAAGATCTTGCTAGTTACATTAGGGACGGGGATGGTGATGGTGGTGTCATCGTTGTCCAC
rJMFF046O19- TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
JMFN015I19+ CAAGATCTTGCTAGTTACCTCGGGGACGGGGATGGTGATGGTGGTGTCATCGTTGTCCAC
JMFF046O19+ TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
                      ____________________________________________________________
consensus TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
 
. : . : . : . : . : . :
JMFN025A13+ AATCATGTACTTGAGCATTTGTGACTTGAGCGCCACCGCCTCCTCCACCTCGAAGATCTC
rJMFF046O19- AATCATGTACTTGAGTACCTGCGACTNCAGCGCCACCTCCTCATCCACCTTGAAGATCTC
JMFN015I19+ AATCATGTACTTGAGCATCTGCGACTCGAGCGCCACCGCCTCCTCCACCTGGAAGATCTC
JMFF046O19+ AATCATGTACTTGAGTACCTGCGACTCAAGCGCCACCTCCTCATCCACCTTGAAGATCTC
                      ____________________________________________________________
consensus AATCATGTACTTGAGTACCTGCGACTCGAGCGCCACCTCCTCATCCACCTTGAAGATCTC
 
. : . : . : . : . : . :
JMFN025A13+ TCCGTC
rJMFF046O19- TCCGTCGGAACTCTTCAAAATGATCATCTTTGA
JMFN015I19+ CCCGTCGGAACTCTTCAAAATGATCGTCTTTGAGGAAGACATCGGAATTTCGTAAGATGA
JMFF046O19+ TCCGTCGGAACTCTTCAAAATGATCATCTTTGAGGAAGACATCGGAACTTAGTAGGATGA
                      ____________________________________________________________
consensus TCCGTCGGAACTCTTCAAAATGATCATCTTTGAGGAAGACATCGGAATTTCGTAGGATGA
 
. : . : . : . : . : . :
JMFN015I19+ AATTTGGGGAAAACCCAA
JMFF046O19+ AATTTGGGAAAAAACCAAAGGGAATTTAACAAAGCAAAAAGAGCAAAGAAACCTATTATT
                      ____________________________________________________________
consensus AATTTGGGGAAAACCCAAAGGGAATTTAACAAAGCAAAAAGAGCAAAGAAACCTATTATT