Contig 001777:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F09Sequence579001777 (4)ref|XP_009603108.1|1e-65PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento758006971 (3)ref|NP_001234428.1|3e-87signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|
JMFF046H09Sequence594001777 (4)ref|XP_009603108.1|2e-42PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento442006971 (3)
JMFS002F09Sequence485001777 (4)ref|XP_009603108.1|3e-29PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento
JMSF008E23Sequence390001777 (4)ref|XP_009603108.1|2e-30PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento786006971 (3)ref|NP_001234428.1|2e-91signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF002F09+ CCTACAAACATGACAACACTAGGCTTCCCTTTCTT
                      ____________________________________________________________
consensus CCTACAAACATGACAACACTAGGCTTCCCTTTCTT
 
. : . : . : . : . : . :
JMFF002F09+ TGGTGTGAATGATGGTTTTCCAGGATCCAAAATCTTGCAAAGCTCGTTAAATACAGCCTG
JMFF046H09+ TTAAATACAGCCTG
                      ____________________________________________________________
consensus TGGTGTGAATGATGGTTTTCCAGGATCCAAAATCTTGCAAAGCTCGTTAAATACAGCCTG
 
. : . : . : . : . : . :
JMFF002F09+ TTGGATGATCTTACGCTTGTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
JMFS002F09+ AATCCGCTT
JMSF008E23+ AATCCGCTT
JMFF046H09+ TNGGATGATCTTACGCTGNTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
                      ____________________________________________________________
consensus TTGGATGATCTTACGCTTGTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
 
. : . : . : . : . : . :
JMFF002F09+ GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMFS002F09+ GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMSF008E23+ GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMFF046H09+ GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
                      ____________________________________________________________
consensus GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
 
. : . : . : . : . : . :
JMFF002F09+ AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMFS002F09+ AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMSF008E23+ AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMFF046H09+ AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
                      ____________________________________________________________
consensus AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
 
. : . : . : . : . : . :
JMFF002F09+ CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMFS002F09+ CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMSF008E23+ CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMFF046H09+ CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
                      ____________________________________________________________
consensus CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
 
. : . : . : . : . : . :
JMFF002F09+ TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMFS002F09+ TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMSF008E23+ TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMFF046H09+ TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
                      ____________________________________________________________
consensus TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
 
. : . : . : . : . : . :
JMFF002F09+ CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMFS002F09+ CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMSF008E23+ CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMFF046H09+ CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
                      ____________________________________________________________
consensus CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
 
. : . : . : . : . : . :
JMFF002F09+ ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMFS002F09+ ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMSF008E23+ ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMFF046H09+ ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
                      ____________________________________________________________
consensus ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
 
. : . : . : . : . : . :
JMFF002F09+ TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
JMFS002F09+ TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
JMSF008E23+ TTCAGGTTCGTGTCAAT
JMFF046H09+ TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
                      ____________________________________________________________
consensus TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
 
. : . : . : . : . : . :
JMFF002F09+ TTCT
JMFS002F09+ TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGAAGTCTTA
JMFF046H09+ TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGATGTCTTATCTT
                      ____________________________________________________________
consensus TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGATGTCTTATCTT