Contig 001774:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043P01Sequence617001774 (12)ref|XP_009629090.1|2e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R509001774 (12)ref|XP_009629090.1|4e-33PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFF045O23Sequence620001774 (12)ref|XP_009629090.1|2e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R570001774 (12)ref|XP_009629090.1|2e-29PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN012M16Sequence585001774 (12)ref|XP_009629090.1|1e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN019N03Sequence594001774 (12)ref|XP_009629090.1|1e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN033M19Sequence632001774 (12)ref|XP_009629090.1|2e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN035N21Sequence615001774 (12)ref|XP_009629090.1|8e-32PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN035P16Sequence607001774 (12)ref|XP_009629090.1|6e-32PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMFN037C21Sequence623001774 (12)ref|XP_009629090.1|1e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R
JMSF025B05Sequence692001774 (12)ref|XP_009629090.1|3e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R655001774 (12)ref|XP_009629090.1|2e-31PREDICTED: rapid alkalinization factor [Nicotiana tomentosiformis] sp|Q945T0.1|R

Alignment

This contig is upended


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rJMFF045O23-                                GGAGAAAGAAATTGTACTAAAAAAAAAAAAAAAAGAGG
                      ____________________________________________________________
consensus                                   GGAGAAAGAAATTGTACTAAAAAAAAAAAAAAAAGAGG
 
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rJMFF045O23-          AAAAATTAAATACACATAATTACTTATAATTGACAGACAATTTGATGCGTAAGATGCAGT
JMFN037C21+                                                                ATGCAGT
JMSF025B05+                                    ATAATTGACAGACAATTTGATGCGTAAGATGCAGT
                      ____________________________________________________________
consensus             AAAAATTAAATACACATAATTACTTATAATTGACAGACAATTTGATGCGTAAGATGCAGT
 
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rJMFF045O23-          ATACATCTTCAATCTCTTTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMFN035P16+                                       TTCATCATTGCGTATACCAAACAATCCAATCT
rJMSF025B05-             CATCTTCAATCTCTTTTCACATTGGTTCATCATTGCGTATACCAAACAATCCAATCT
JMFN037C21+           ATACATCTTCAATCTCTTTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMFN035N21+                   TCAATCTCTTTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMFN033M19+                            TTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMFN019N03+                                                            CAATCCAATCT
rJMFF043P01-                                CATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMSF025B05+           ATACATCTTCAATCTCTTTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
JMFF045O23+                                                   TATACCAAACAATCCAATCT
                      ____________________________________________________________
consensus             ATACATCTTCAATCTCTTTTCACATT-GTTCATCATTGCGTATACCAAACAATCCAATCT
 
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rJMFF045O23-          AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMFN035P16+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTNCCGATGAAG
JMFN012M16+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
rJMSF025B05-          AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMFN037C21+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTNCCGATGAAG
JMFN035N21+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMFN033M19+           AAACAAGTTTTAGAATTAAAAT-TAAAAAATAAGGAGACAAAAAAAATGTNCCGATGAAG
JMFN019N03+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
rJMFF043P01-          AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMSF025B05+           AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMFF043P01+              CAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
JMFF045O23+           AAACAAGTTTTAGAATTAAAATNTAAAAAATAAGGAGACAAAAAAAATGTNCCGATGAAG
                      ____________________________________________________________
consensus             AAACAAGTTTTAGAATTAAAATTTAAAAAATAAGGAGACAAAAAAAATGTACCGATGAAG
 
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rJMFF045O23-          AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN035P16+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN012M16+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
rJMSF025B05-          AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN037C21+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN035N21+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN033M19+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFN019N03+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
rJMFF043P01-          AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMSF025B05+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFF043P01+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
JMFF045O23+           AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
                      ____________________________________________________________
consensus             AAGCAATTGCGGAGTGGGTGGTGTTATTGAAGACGAGAGAGAGTGATGATGTCATCTAAC
 
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rJMFF045O23-          TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN035P16+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN012M16+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
rJMSF025B05-          TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN037C21+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN035N21+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN033M19+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFN019N03+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
rJMFF043P01-          TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMSF025B05+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFF043P01+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
JMFF045O23+           TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
                      ____________________________________________________________
consensus             TAACCCCTGCATCGAGTAATGGCGCTGCAGCCGCGGGTGTAGGGGTTGGCCTGGGCGCCG
 
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rJMFF045O23-          GGGCGGCAGTTGTAGTAAGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN035P16+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN012M16+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
rJMSF025B05-          GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN037C21+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN035N21+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN033M19+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFN019N03+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
rJMFF043P01-          GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMSF025B05+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFF043P01+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
JMFF045O23+           GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
                      ____________________________________________________________
consensus             GGGCGGCAGTTGTAGTAGGAAGCGCCGCGTCGGGAGCAGGGGATGTTGTTCTTCTGCAGC
 
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rJMFF045O23-          GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN035P16+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN012M16+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
rJMSF025B05-          GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN037C21+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN035N21+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN033M19+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFN019N03+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
rJMFF043P01-          GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMSF025B05+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFF043P01+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
JMFF045O23+           GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
                      ____________________________________________________________
consensus             GCACCGTAGCTGATGTACCGCGTGGTGGCTAATATGCGCCGGCTCGATTCGCTCTCCATC
 
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rJMFF045O23-          TCCAGCTCCTCCGCCTCCGCCAGGGACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN035P16+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN012M16+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
rJMSF025B05-          TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN037C21+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN035N21+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN033M19+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFN019N03+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
rJMFF043P01-          TCCAGCTCCTCCGCCTCCGCCAGGNACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMSF025B05+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFF043P01+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
JMFF045O23+           TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
                      ____________________________________________________________
consensus             TCCAGCTCCTCCGCCTCCGCCAGGCACTCCGCCGTGCTTCCGTCGCACCTCCCGCCGGAT
 
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rJMFF045O23-          CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGA       
JMFN035P16+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFN012M16+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
rJMSF025B05-          CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFN037C21+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFN035N21+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFN033M19+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFN019N03+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
rJMFF043P01-          CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMSF025B05+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFF043P01+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
JMFF045O23+           CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
                      ____________________________________________________________
consensus             CCCGCCGCCATCATCCAGCTCACCAATTCGCCGTCCCCGCTCGCCGTCGCGGAAGCCCAG
 
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JMFN035P16+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFN012M16+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
rJMSF025B05-          TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFN037C21+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFN035N21+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFN033M19+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFN019N03+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
rJMFF043P01-          TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACT                      
JMSF025B05+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFF043P01+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
JMFF045O23+           TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
                      ____________________________________________________________
consensus             TAGGGGCTTAGCATCACAGTAACACACAAAATCAAACTCAGAAACGAGAGAGAAGAGAAC
 
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JMFN035P16+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFN012M16+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
rJMSF025B05-          GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFN037C21+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFN035N21+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFN033M19+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFN019N03+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMSF025B05+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFF043P01+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
JMFF045O23+           GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
                      ____________________________________________________________
consensus             GCCATTTCTGTGCTCAGATTTCCTTCAACAAAACCGGAAATCCTCTTCTTCTGTGTTCGG
 
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JMFN035P16+           ATTTCTTCTCCTTTGTCGTCTTTCCGCTCCGCCGC                         
JMFN012M16+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTG               
rJMSF025B05-          ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTCTTTC     
JMFN037C21+           ATTTCTTCTCCTTCGTC                                           
JMFN035N21+           ATTTCTTCTCCTTCGTCGTCTTTC                                    
JMFN033M19+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTC         
JMFN019N03+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTT                 
JMSF025B05+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTCTTTC     
JMFF043P01+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTCTTTC     
JMFF045O23+           ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTCTTTCTTGCC
                      ____________________________________________________________
consensus             ATTTCTTCTCCTTCGTCGTCTTTCCGCTCCGCCGCTCAGGTTTTGATTCTCTTTCTTGCC