clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF015L22 | Sequence | 522 | 001744 (3) | ref|XP_009767473.1| | 2e-38 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 711 | 002559 (3) | ref|XP_009612668.1| | 8e-62 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic |
JMFF039K21 | Sequence | 556 | 001744 (3) | ref|XP_009767473.1| | 2e-44 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 714 | 002559 (3) | ref|XP_009612668.1| | 9e-50 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic |
JMSF004K02 | Sequence | 417 | 001744 (3) | ref|XP_009767473.1| | 3e-19 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 544 | 002559 (3) | emb|CAN67401.1| | 3e-36 | hypothetical protein VITISV_025967 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFF039K21+ TCCTATTCAACATCCT
____________________________________________________________
consensus TCCTATTCAACATCCT
. : . : . : . : . : . :
JMFF015L22+ ATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
JMFF039K21+ GTTAGCTTCCTCAACCCTATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
____________________________________________________________
consensus GTTAGCTTCCTCAACCCTATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
. : . : . : . : . : . :
JMFF015L22+ AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
JMSF004K02+ TT
JMFF039K21+ AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
____________________________________________________________
consensus AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
. : . : . : . : . : . :
JMFF015L22+ CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
JMSF004K02+ CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
JMFF039K21+ CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
____________________________________________________________
consensus CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
. : . : . : . : . : . :
JMFF015L22+ GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
JMSF004K02+ GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
JMFF039K21+ GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
____________________________________________________________
consensus GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
. : . : . : . : . : . :
JMFF015L22+ CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
JMSF004K02+ CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
JMFF039K21+ CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
____________________________________________________________
consensus CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
. : . : . : . : . : . :
JMFF015L22+ TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
JMSF004K02+ TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
JMFF039K21+ TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
____________________________________________________________
consensus TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
. : . : . : . : . : . :
JMFF015L22+ GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
JMSF004K02+ GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
JMFF039K21+ GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
____________________________________________________________
consensus GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
. : . : . : . : . : . :
JMFF015L22+ CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
JMSF004K02+ CTTGAAGAAGAGAGGAGTGCGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
JMFF039K21+ CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
____________________________________________________________
consensus CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
. : . : . : . : . : . :
JMFF015L22+ AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCA
JMSF004K02+ AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCA
JMFF039K21+ AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCAGAATCTC
____________________________________________________________
consensus AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCAGAATCTC