Contig 001744:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015L22Sequence522001744 (3)ref|XP_009767473.1|2e-38PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic711002559 (3)ref|XP_009612668.1|8e-62PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic
JMFF039K21Sequence556001744 (3)ref|XP_009767473.1|2e-44PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic714002559 (3)ref|XP_009612668.1|9e-50PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic
JMSF004K02Sequence417001744 (3)ref|XP_009767473.1|3e-19PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic544002559 (3)emb|CAN67401.1|3e-36hypothetical protein VITISV_025967 [Vitis vinifera]

Alignment

This contig is upended


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JMFF039K21+                                                       TCCTATTCAACATCCT
                      ____________________________________________________________
consensus                                                         TCCTATTCAACATCCT
 
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JMFF015L22+                             ATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
JMFF039K21+           GTTAGCTTCCTCAACCCTATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
                      ____________________________________________________________
consensus             GTTAGCTTCCTCAACCCTATTCAGTTTACAGAATCCGCTAATCAAAACATTATATGTAAC
 
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JMFF015L22+           AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
JMSF004K02+                                                                     TT
JMFF039K21+           AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
                      ____________________________________________________________
consensus             AGCATTTGGCTCCCCAAATTGCTCCAGAATCTGCATCACTTTCACTGCCTTTTCAGCTTT
 
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JMFF015L22+           CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
JMSF004K02+           CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
JMFF039K21+           CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
                      ____________________________________________________________
consensus             CTTAACCCTAAAAAGCCCCTTGATAAGCTTTGTACAGAGAACCACATCGGGTTTGTACCC
 
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JMFF015L22+           GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
JMSF004K02+           GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
JMFF039K21+           GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
                      ____________________________________________________________
consensus             GATCTTCACCATGGATTCAAGATGATACAGAGCTTCGCCATATTTCCCTGCCCCGCAAGA
 
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JMFF015L22+           CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
JMSF004K02+           CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
JMFF039K21+           CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
                      ____________________________________________________________
consensus             CCTATACAGCGCTCTCTTAATGTCGGCTTCTTTGAAATCGTTTGGCTGCGATAAGGTATT
 
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JMFF015L22+           TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
JMSF004K02+           TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
JMFF039K21+           TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
                      ____________________________________________________________
consensus             TCTGTAGTTCTCGGTGGAAAGGTGGAGTCTTTGTATGGGGTTTCGGTTCCTAAATTCATG
 
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JMFF015L22+           GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
JMSF004K02+           GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
JMFF039K21+           GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
                      ____________________________________________________________
consensus             GCTTCTTCTGCATTTCACTGCAGAGGTGCTGCGGTTGCGATTTGTGGTGGGTTGGAGTTT
 
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JMFF015L22+           CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
JMSF004K02+           CTTGAAGAAGAGAGGAGTGCGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
JMFF039K21+           CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
                      ____________________________________________________________
consensus             CTTGAAGAAGAGAGGAGTGTGAGGGAAGAGGTGATTAGACAAGGAAACTGTCATGGGGTT
 
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JMFF015L22+           AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCA       
JMSF004K02+           AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCA       
JMFF039K21+           AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCAGAATCTC
                      ____________________________________________________________
consensus             AGTGTTTCTTGATGTTCATGGAGAAATGAAGCACCTGAGAAGCTGTGTTCGCAGAATCTC