Contig 001732:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E02Sequence567001732 (2)ref|XP_002321279.1|1e-43membrane family protein [Populus trichocarpa] gb|EEE99594.1| membrane family pro641002638 (2)ref|XP_009605725.1|4e-40PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X
JMSF002N03Sequence353001732 (2)ref|XP_006356765.1|2e-11PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like isof719002638 (2)ref|XP_009785282.1|1e-81PREDICTED: thiamine-repressible mitochondrial transport protein THI74 [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF036E02+ TGGACTTGAAGCATCAGCTTGGAAATG
                      ____________________________________________________________
consensus TGGACTTGAAGCATCAGCTTGGAAATG
 
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JMFF036E02+ GAAACCCGAGTTATCATCCCCTAGAAGAATAACCTCCTCAGATTCTCTCAATTCTTGCAA
                      ____________________________________________________________
consensus GAAACCCGAGTTATCATCCCCTAGAAGAATAACCTCCTCAGATTCTCTCAATTCTTGCAA
 
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JMFF036E02+ ACTACAACTCTCTCTCTTTCGCCAAAACAAAACACTCCCATACTTATCCTCTAAATACCG
                      ____________________________________________________________
consensus ACTACAACTCTCTCTCTTTCGCCAAAACAAAACACTCCCATACTTATCCTCTAAATACCG
 
. : . : . : . : . : . :
JMFF036E02+ TCCAATTTCAACTAGGGGAATATATACCACGAATAATGAATTACAAATGTATGTTATGAG
                      ____________________________________________________________
consensus TCCAATTTCAACTAGGGGAATATATACCACGAATAATGAATTACAAATGTATGTTATGAG
 
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JMSF002N03+ GGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
JMFF036E02+ AAATGGGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
                      ____________________________________________________________
consensus AAATGGGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
 
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JMSF002N03+ GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
JMFF036E02+ GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
                      ____________________________________________________________
consensus GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
 
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JMSF002N03+ TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
JMFF036E02+ TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
                      ____________________________________________________________
consensus TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
 
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JMSF002N03+ TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
JMFF036E02+ TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
                      ____________________________________________________________
consensus TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
 
. : . : . : . : . : . :
JMSF002N03+ AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
JMFF036E02+ AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
                      ____________________________________________________________
consensus AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
 
. : . : . : . : . : . :
JMSF002N03+ TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCT
JMFF036E02+ TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCTGTC
                      ____________________________________________________________
consensus TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCTGTC