Contig 001728:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035D19Sequence540001728 (4)689012371 (4)emb|CDP20325.1|2e-11unnamed protein product [Coffea canephora]
JMFF038F15Sequence354001728 (4)728012371 (4)ref|XP_010109822.1|2e-13hypothetical protein L484_018479 [Morus notabilis] gb|EXC24765.1| hypothetical p
JMSF027H22Sequence666001728 (4)ref|XP_009781256.1|261PREDICTED: uncharacterized protein LOC104230215 [Nicotiana sylvestris] ref|XP_00761012371 (4)emb|CDP20325.1|2e-19unnamed protein product [Coffea canephora]
JMSF031P05Sequence673001728 (4)ref|XP_009781256.1|314PREDICTED: uncharacterized protein LOC104230215 [Nicotiana sylvestris] ref|XP_00693012371 (4)emb|CDP20325.1|2e-13unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF031P05+               AGCTGCAGGTGCACCGTAGTAAGAGAACTCAACAACATCAACGTCACACCATATGC
                      ____________________________________________________________
consensus                 AGCTGCAGGTGCACCGTAGTAAGAGAACTCAACAACATCAACGTCACACCATATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031P05+           CCCCTGGTCCCTCAAGATAGGCCGGGAGACATTCGACACAGCTCAGACACTGCCTGTTGA
JMSF027H22+                                 CGGGAGACATTCGACACAGCTCAGACACTGCCTGTTGA
                      ____________________________________________________________
consensus             CCCCTGGTCCCTCAAGATAGGCCGGGAGACATTCGACACAGCTCAGACACTGCCTGTTGA
 
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JMSF031P05+           CTTTTCTGGCAACGAAGACAAGAATAGCAGGTATTTCTGTCAAAACACCACGCCTGATGC
JMSF027H22+           CTTTTCTGGCAACGAAGACAAGAATAGCAGGTATTTCTGTCAAAACACCACGCCTGATGC
                      ____________________________________________________________
consensus             CTTTTCTGGCAACGAAGACAAGAATAGCAGGTATTTCTGTCAAAACACCACGCCTGATGC
 
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JMSF031P05+           GAAATCCAATTGCTGTTCCAAGACTAAACCGGCGAAGGATTTTGCTATGAAACGCCCTAA
JMSF027H22+           GAAATCCAATTGCTGTTCCAAGACTAAACCGGCGAAGGATTTTGCTATGAAACGCCCTAA
                      ____________________________________________________________
consensus             GAAATCCAATTGCTGTTCCAAGACTAAACCGGCGAAGGATTTTGCTATGAAACGCCCTAA
 
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JMSF031P05+           CGGTCATAAGATCAAGCAACGTCGTAGCTTGTTGTCCAGATGGAAGCCGCCCATGAGTTT
JMSF027H22+           CGGTCATAAGATCAAGCAACGTCGTAGCTTGTTGTCCAGATGGAAGCCGCCCATGAGTTT
                      ____________________________________________________________
consensus             CGGTCATAAGATCAAGCAACGTCGTAGCTTGTTGTCCAGATGGAAGCCGCCCATGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031P05+           CAGGTAGAACCCTCTTCTGAAGGTGTCCAAAGTAATTTGCCCTCTCAACGGCATCCAACC
JMSF027H22+           CAGGTAGAACCCTCTTCTGAAGGTGTCCAAAGTAATTTGCCCTCTCAACGGCATCCAACC
                      ____________________________________________________________
consensus             CAGGTAGAACCCTCTTCTGAAGGTGTCCAAAGTAATTTGCCCTCTCAACGGCATCCAACC
 
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JMSF031P05+           GGCTAGGCCATGAAAAGTAAGCTGCATTGCTCTCTGGGATCTGACTACTCGATGCAAAGG
JMSF027H22+           GGCTAGGCCATGAAAAGTAAGCTGCATTGCTCTCTGGGATCTGACTACTCGATGCAAAGG
                      ____________________________________________________________
consensus             GGCTAGGCCATGAAAAGTAAGCTGCATTGCTCTCTGGGATCTGACTACTCGATGCAAAGG
 
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JMSF031P05+           CTTGTAGTGGTGGAGGACTTGTTGAAGGCAGATTCATATGATTGCAACAATTTCTTTCCA
JMSF027H22+           CTTGTAGTGGTGGAGGACTTGTTGAAGGCAGATTCATATGATTGCAACAATTTCTTTCCA
                      ____________________________________________________________
consensus             CTTGTAGTGGTGGAGGACTTGTTGAAGGCAGATTCATATGATTGCAACAATTTCTTTCCA
 
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JMSF031P05+           AATCTAAAGCCGATTCCTCTGATTGTGCAGATCCAGAATGATTGAATCTCAAATCCAGCT
JMSF027H22+           AATCTAAAGCCGATTCCTCTGATTGTGCAGATCCAGAATGATTGAATCTCAAATCCAGCT
JMFF035D19+           AATCTAAAGCCGATTCCTCTGATTGTGCAGATCCAGAATGATTGAATCTCAAATCCAGCT
                      ____________________________________________________________
consensus             AATCTAAAGCCGATTCCTCTGATTGTGCAGATCCAGAATGATTGAATCTCAAATCCAGCT
 
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JMSF031P05+           TTGCCCTCTCCATCTTTCAGCTTTCCTGAACAATC                         
JMSF027H22+           TTGCCCTCTCCATCTTTCAGCTTTCC                                  
JMFF035D19+           TTGCCCTCTCCATCTTTCAGCTTTCCTGAACAATCTTAGTTAAAATTTCAAGAAAACAAA
                      ____________________________________________________________
consensus             TTGCCCTCTCCATCTTTCAGCTTTCCTGAACAATCTTAGTTAAAATTTCAAGAAAACAAA
 
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JMFF035D19+           ATATTATTCCTCTTACATTATAAACTCCCATGTTTAACATAATCAATCTGCAAAATTCTT
                      ____________________________________________________________
consensus             ATATTATTCCTCTTACATTATAAACTCCCATGTTTAACATAATCAATCTGCAAAATTCTT
 
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JMFF038F15+                  GTAGATTAATTTATAGACATAAAATTATATAGAAGAATGATTTCTGAAAATTA
JMFF035D19+           ATACATTGTAGATTAATTTATAGACATAAAATTATATAGAAGAATGATTTCTGAAAATTA
                      ____________________________________________________________
consensus             ATACATTGTAGATTAATTTATAGACATAAAATTATATAGAAGAATGATTTCTGAAAATTA
 
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JMFF038F15+           CAACACAATTATAAAACAGACANTAATCATACCAACTCCATACCACAAGTTATAGAATTG
JMFF035D19+           CAACACAATTATAAAACAGACACTAATCATACCAACTCCATACCACAAGTTATAGAATTG
                      ____________________________________________________________
consensus             CAACACAATTATAAAACAGACACTAATCATACCAACTCCATACCACAAGTTATAGAATTG
 
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JMFF038F15+           ATCCATTTCATAAAAATCACTGAAATGCATATTTGGAATTTGCATAAAAACCACTAATTT
JMFF035D19+           ATCCATTTCATAAAAATCACTGAAATGCATATTTGGAATTTGCATAAAAACCACTAATTT
                      ____________________________________________________________
consensus             ATCCATTTCATAAAAATCACTGAAATGCATATTTGGAATTTGCATAAAAACCACTAATTT
 
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JMFF038F15+           GAGGAACATACAATAAAACTAGACCTTGAACCTATTCTAAATATTAAACAAGCATAGCAA
JMFF035D19+           GAGGAACATACAATAAAACTAGACCTTGAACCTATTCTAAATATTAAACAAGCATAGCAA
                      ____________________________________________________________
consensus             GAGGAACATACAATAAAACTAGACCTTGAACCTATTCTAAATATTAAACAAGCATAGCAA
 
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JMFF038F15+           AACACTAACGACAATATTCAAAGATATGAAAGGAACGAAAACCAATAAAATGAAGTTTGC
JMFF035D19+           AACACTAACGACAATATTCAAAGATATGAAAGGAACGAAAACCAATAAAATGAAGTTTGC
                      ____________________________________________________________
consensus             AACACTAACGACAATATTCAAAGATATGAAAGGAACGAAAACCAATAAAATGAAGTTTGC
 
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JMFF038F15+           TTCGAAACGCAGATAAGAGTTAGAAAAATGTTGCAACCGTTTTGCACAGAAAATCAATAC
JMFF035D19+           TTCGAAACGCAGATAAGAGTTAGAAAAATGTTGCAACCGTTTTGCACAGAAAATCAATAC
                      ____________________________________________________________
consensus             TTCGAAACGCAGATAAGAGTTAGAAAAATGTTGCAACCGTTTTGCACAGAAAATCAATAC