Contig 001720:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C11Sequence483001720 (3)769022299ref|XP_006357263.1|3e-114PREDICTED: probable receptor-like protein kinase At5g15080-like [Solanum tubero
JMFF015J18Sequence401001720 (3)612002626 (2)ref|XP_006357263.1|6e-107PREDICTED: probable receptor-like protein kinase At5g15080-like [Solanum tubero
JMFF033G15Sequence517001720 (3)607002626 (2)ref|XP_006357263.1|4e-77PREDICTED: probable receptor-like protein kinase At5g15080-like [Solanum tubero

Alignment

This contig is upended


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JMFF008C11+                                  CCAAATCCCCAGACCCTACCACCTCTTTGTTACTCCT
JMFF033G15+                                  CCAAATCCCCAGACCCTACCACCTCTTTGTTACTCCT
                      ____________________________________________________________
consensus                                    CCAAATCCCCAGACCCTACCACCTCTTTGTTACTCCT
 
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JMFF008C11+           CCTTTTTGAATCATCACCCCCTAATCCCATATTTCACAAACCCTAAACTCAAACTCAGAT
JMFF015J18+                                                          CTCAAACTCAGAT
JMFF033G15+           CCTTTTTGAATCATCACCCCCTAATCCCATATTTCACAAACCCTAAACTCAAACTCAGAT
                      ____________________________________________________________
consensus             CCTTTTTGAATCATCACCCCCTAATCCCATATTTCACAAACCCTAAACTCAAACTCAGAT
 
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JMFF008C11+           NTCATCAAAATCCTCTAAAAACCCAAACCCCAATTCATCAACCCTTCAAGCCAAAACCCA
JMFF015J18+           ATCATCAAAATCCTCTAAAAACCCAAACCCCAATTCATCAACCCTTCAAGCCAAAACCCA
JMFF033G15+           ATCATCAAAATCCTCTAAAAACCCAAACCCCAATTCATCAACCCTTCAAGCCAAAACCCA
                      ____________________________________________________________
consensus             ATCATCAAAATCCTCTAAAAACCCAAACCCCAATTCATCAACCCTTCAAGCCAAAACCCA
 
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JMFF008C11+           AAACTTTTTTTCAACTAGAATTTACTTTTCCTCCAAAATCAGGTCAAAAGCTGAATAACC
JMFF015J18+           AAACTTTTTTTCAANTAGAATTTACTTTTCCTCCAAAATCAGGTCAAAAGCTGAATAACC
JMFF033G15+           AAACTTTTTTTCAACTAGAATTTACTTTTCCTCCAAAATCAGGTCAAAAGCTGAATAACC
                      ____________________________________________________________
consensus             AAACTTTTTTTCAACTAGAATTTACTTTTCCTCCAAAATCAGGTCAAAAGCTGAATAACC
 
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JMFF008C11+           CACTTTCAGAAAACCCTTGTATCACTCTCTCCCAAACAGAAAACTCACTTCTCTGTGAGA
JMFF015J18+           CACTTTCAGAAAACCCTTGTATCACTCTCTCCCAAACAGAAAACTCACTTCTCTGTGAGA
JMFF033G15+           CACTTTCAGAAAACCCTTGTATCACTCTCTCCCAAACAGAAAACTCACTTCTCTGTGAGA
                      ____________________________________________________________
consensus             CACTTTCAGAAAACCCTTGTATCACTCTCTCCCAAACAGAAAACTCACTTCTCTGTGAGA
 
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JMFF008C11+           AATAGCTCAGACCCAGGCCTGGAAACGAAGGAAAACTGGCATTCGAAGTGTGGGTGGATT
JMFF015J18+           AATAGCTCAGACCCAGGCCTGGAAACGAAGGAAAACTGGCATTCGAAGTGTGGGTGGATT
JMFF033G15+           AATAGCTCAGACCCAGGCCTGGAAACGAAGGAAAACTGGCATTCGAAGTGTGGGTGGATT
                      ____________________________________________________________
consensus             AATAGCTCAGACCCAGGCCTGGAAACGAAGGAAAACTGGCATTCGAAGTGTGGGTGGATT
 
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JMFF008C11+           CAGATCACGTGCCTTTGTGGAGTCTTGATTGACCTACCAACCTCTGAGAAGAAGAGGAGA
JMFF015J18+           CAGATCACGTGCCTTTGTGGAGTCTTGATTGACCTACCAACCTCTGAGAAGAAGAGGAGA
JMFF033G15+           CAGATCACGTGCCTTTGTGGAGTCTTGATTGACCTACCAACCTCTGAGAAGAAGAGGAGA
                      ____________________________________________________________
consensus             CAGATCACGTGCCTTTGTGGAGTCTTGATTGACCTACCAACCTCTGAGAAGAAGAGGAGA
 
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JMFF008C11+           AGAGAAAAAGGAAGAGAACACAACACATCATACAAACAGTGAGTGCCAAGGCAAAGCTGG
JMFF015J18+           AGAGAAAAAGGAAGAGAACACAACACATCATACAAACAGTGAGTGCCAAGGCAAAGNTGG
JMFF033G15+           AGAGAAAAAGGAAGAGAACACAACACATCATACAAACAGTGAGTGCCAAGGCAAAGCTGG
                      ____________________________________________________________
consensus             AGAGAAAAAGGAAGAGAACACAACACATCATACAAACAGTGAGTGCCAAGGCAAAGCTGG
 
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JMFF008C11+           TATCCCCCACTTCAAAAGTGCTCCCC                                  
JMFF015J18+           TATCCCCCACTTCAAAAGTGCTCCCC                                  
JMFF033G15+           TATCCCCCACTTCAAAAGTGCCCCCCAGAAAGAAAATGTCTGCTTCCCCCAAAGATAATT
                      ____________________________________________________________
consensus             TATCCCCCACTTCAAAAGTGCTCCCCAGAAAGAAAATGTCTGCTTCCCCCAAAGATAATT