Contig 001711:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031H11Sequence593001711 (3)ref|XP_006347529.1|7e-69PREDICTED: neurofilament medium polypeptide-like [Solanum tuberosum]771001711 (3)ref|XP_010251253.1|2e-30PREDICTED: FK506-binding protein 5-like [Nelumbo nucifera]
JMFN039M02Sequence512001711 (3)gb|KJB52480.1|7e-13hypothetical protein B456_008G263900 [Gossypium raimondii]

Alignment

This contig is upended


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rJMFF031H11-                       ATTATTATTATTATTATTATGTTTAGTACCTCGTACATGTAATAGTA
                      ____________________________________________________________
consensus                          ATTATTATTATTATTATTATGTTTAGTACCTCGTACATGTAATAGTA
 
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rJMFF031H11-          ATACAATAATAATAGCACCACATGTTGATATGGTACGGTTTTCATGCACCAAATTCCATT
                      ____________________________________________________________
consensus             ATACAATAATAATAGCACCACATGTTGATATGGTACGGTTTTCATGCACCAAATTCCATT
 
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JMFN039M02+                                             AATATAATAAAACCTGTGGGGGATTT
rJMFF031H11-          CCTATATTACACATGCTCGCTGGGAGAAACCCACAATATAATAAAACCTGTGGGGGATTT
                      ____________________________________________________________
consensus             CCTATATTACACATGCTCGCTGGGAGAAACCCACAATATAATAAAACCTGTGGGGGATTT
 
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JMFN039M02+           AGCAATTAATTAACCTCGTACGGCAGTCCATGACGAGATAACCTTTTCACAAATACTGTA
rJMFF031H11-          AGCAATTAATTAACCTCGTACGGCAGTCCATGACGAGATAACCTTTTCACAAATACTGTA
                      ____________________________________________________________
consensus             AGCAATTAATTAACCTCGTACGGCAGTCCATGACGAGATAACCTTTTCACAAATACTGTA
 
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JMFN039M02+           TACAGTAAGTTAAGCTCGTAGATCATCACGAAATGCAACATGCATTAGGGTTTTCGTCGG
rJMFF031H11-          TACAGTAAGTTAAGCTCGTAGATCATCACGAAATGCAACATGCATTAGGGTTTTCGTCGG
                      ____________________________________________________________
consensus             TACAGTAAGTTAAGCTCGTAGATCATCACGAAATGCAACATGCATTAGGGTTTTCGTCGG
 
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JMFN039M02+           AGAAGATCTGAGGCGCCGGCGGGATTCTTTCAATGTAGTAAAGCGGCTGATAATAGTACA
rJMFF031H11-          AGAAGATCTGAGGCGCCGGCGGGATTCTTTCAATGTAGTAAAGCGGCTGATAATAGTACA
                      ____________________________________________________________
consensus             AGAAGATCTGAGGCGCCGGCGGGATTCTTTCAATGTAGTAAAGCGGCTGATAATAGTACA
 
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JMFN039M02+           TCATCTTATGCATGCCAGCCGCTGCTTCTTCGCTTACACTCTCTTCTTCTTCCGCTTTCG
rJMFF031H11-          TCATCTTATGCATGCCAGCCGCTGCTTCTTCGCTTACACTCTCTTCTTCTTCCGCTTTCG
                      ____________________________________________________________
consensus             TCATCTTATGCATGCCAGCCGCTGCTTCTTCGCTTACACTCTCTTCTTCTTCCGCTTTCG
 
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JMFN039M02+           CCTCCTCTTTCTTCTCTCCCTCCGCCGCCGCCGCCTTTTCGCCTTCCTCTTTCTTCTCTT
rJMFF031H11-          CCTCCTCTTTCTTCTCTCCCTCCGCCGCCGCTGCCTTTTCGCCTTCCTCTTTCTTCTCTT
                      ____________________________________________________________
consensus             CCTCCTCTTTCTTCTCTCCCTCCGCCGCCGCTGCCTTTTCGCCTTCCTCTTTCTTCTCTT
 
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JMFN039M02+           CCGCCGCCGCCGCCTCCTCTGCAGGCTTCTCTTCTCCGGCCTTCTTTTCCTCCGGCTTGG
rJMFF031H11-          CCGCCGCCGCCGCCTCCTCTGCAGGCTTCTCTTCTCCGGCCTTCTTTTCCTCCGGCTTGG
                      ____________________________________________________________
consensus             CCGCCGCCGCCGCCTCCTCTGCAGGCTTCTCTTCTCCGGCCTTCTTTTCCTCCGGCTTGG
 
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JMFN039M02+           GTTCCTCGGCCGGCGGCGCCTTTTCAGGCTCAGGCTCAGGCTGAGGGACGATCTTCGCTT
rJMFF031H11-          GTTCCTCGGCCGGCGGCGCCTTTTCAGGCTCAGGCTCAGGCTGAGGGACGATCTTCGCTT
                      ____________________________________________________________
consensus             GTTCCTCGGCCGGCGGCGCCTTTTCAGGCTCAGGCTCAGGCTGAGGGACGATCTTCGCTT
 
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JMFN039M02+           GCTTTTTGGTGCGCCGGTAGACGTAGTCTACTAGCTTGTCGGCGTCCATGGTCCCGGTCA
rJMFF031H11-          GCTTTTTGGTGCGCCGGTAGACGTAGTCTACTAGCTTGTCGGCGTCCATGGTCCCGGTCA
                      ____________________________________________________________
consensus             GCTTTTTGGTGCGCCGGTAGACGTAGTCTACTAGCTTGTCGGCGTCCATGGTCCCGGTCA
 
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JMFN039M02+           CCGTCA                                                      
rJMFF031H11-          CCGTCACCTTACCGGANGCTAGTTCGGTTTCTGCTGTTCTCACTCCTTTCATTTTGAGTA
JMFF031H11+                  CTTACCGGAGGCTAGTTCGGTTTCTGCTGTTCTCACTCCTTTCATTTTGAGTA
                      ____________________________________________________________
consensus             CCGTCACCTTACCGGAGGCTAGTTCGGTTTCTGCTGTTCTCACTCCTTTCATTTTGAGTA
 
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rJMFF031H11-          TCTTGCTTTTAAGCTGCTGGGCACAAGCCTCGCAATGCATGTTGACAGTAAGTTCCACAG
JMFF031H11+           TCTTGCTTTTAAGCTGCTGGGCACAAGCCTCGCAATGCATGTTGACAGTAAGTTCCACAG
                      ____________________________________________________________
consensus             TCTTGCTTTTAAGCTGCTGGGCACAAGCCTCGCAATGCATGTTGACAGTAAGTTCCACAG
 
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rJMFF031H11-          TAGT                                                        
JMFF031H11+           TAGTCAATCCACTAACCTGGGAGGCAACAACTTCGGGTATAGGTTCACCCTCAGCAGCCG
                      ____________________________________________________________
consensus             TAGTCAATCCACTAACCTGGGAGGCAACAACTTCGGGTATAGGTTCACCCTCAGCAGCCG
 
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JMFF031H11+           GTAAAGGTGACAATACCTTTGCAACCCTCTTTGTTTTCTTTGTAATCCTCTTACAAATTG
                      ____________________________________________________________
consensus             GTAAAGGTGACAATACCTTTGCAACCCTCTTTGTTTTCTTTGTAATCCTCTTACAAATTG
 
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JMFF031H11+           CTTCCGGCTCTACTACCCCTTTTATTGTCACTTCATTTTTAGCCATGTCTATCACTACCC
                      ____________________________________________________________
consensus             CTTCCGGCTCTACTACCCCTTTTATTGTCACTTCATTTTTAGCCATGTCTATCACTACCC
 
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JMFF031H11+           CTTCAACACCTCTAATTTTCAAAATGGATCTCTGAATCTTCTTAGCACATCCCATACAAT
                      ____________________________________________________________
consensus             CTTCAACACCTCTAATTTTCAAAATGGATCTCTGAATCTTCTTAGCACATCCCATACAAT
 
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JMFF031H11+           GCAAGTCCACATAGAGGACAAAAGGTGGGGGAGGCTTAGGAGGCTCTTCTTCCTCCTTTT
                      ____________________________________________________________
consensus             GCAAGTCCACATAGAGGACAAAAGGTGGGGGAGGCTTAGGAGGCTCTTCTTCCTCCTTTT
 
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JMFF031H11+           TCTCTTCTTGATCTGCTGCACCGCCTTTCTCTTCCTTTTTCTCTTCTACTTTCTCTTCCT
                      ____________________________________________________________
consensus             TCTCTTCTTGATCTGCTGCACCGCCTTTCTCTTCCTTTTTCTCTTCTACTTTCTCTTCCT
 
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JMFF031H11+           TTTTCTCCTCTACTACTTTAACCTCTCCCTCAACTGCTTCCTGTTGTTTAACTTCTTCGC
                      ____________________________________________________________
consensus             TTTTCTCCTCTACTACTTTAACCTCTCCCTCAACTGCTTCCTGTTGTTTAACTTCTTCGC
 
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JMFF031H11+           CCATTTTGCAACTACTGATGTGAAGATGTATGCTTAGTGAGGAAGGGAGAAGCAGAAACT
                      ____________________________________________________________
consensus             CCATTTTGCAACTACTGATGTGAAGATGTATGCTTAGTGAGGAAGGGAGAAGCAGAAACT