Contig 001690:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF005A03-                                 CTTGTTCTCATATTGTCACCAATTATTAGAGAGTGAC
rJMFF008H04-                                  TTGTTCTCATATTGTCACCAATTATTAGAGAGTGAC
                      ____________________________________________________________
consensus                                    CTTGTTCTCATATTGTCACCAATTATTAGAGAGTGAC
 
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rJMFF005A03-          ACAATTGCTAACCTAAATTGTTCCACAGTAACAGATTACAGCAAATAAGTCCTCTGCTTT
rJMFF008H04-          ACAATTGCTAACCTAAATTGTTCCACAGTAACAGATTACAGCAAATAAGTCCTCTGCTTT
                      ____________________________________________________________
consensus             ACAATTGCTAACCTAAATTGTTCCACAGTAACAGATTACAGCAAATAAGTCCTCTGCTTT
 
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rJMFF005A03-          TTCAAGTTAAAAAGGGTCAGTGAAACCAGTTTTAAACTCATAACCACCACAACTGGCTAA
rJMSF033L02-                                 AACCAGTTTTANACTCATAACCACCACAACTGGCTAA
rJMFF008H04-          TTCAAGTTAAAAAGGGTCAGTGAAACCAGTTTTAAACTCATAACCACCACAACTGGCTAA
                      ____________________________________________________________
consensus             TTCAAGTTAAAAAGGGTCAGTGAAACCAGTTTTAAACTCATAACCACCACAACTGGCTAA
 
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rJMFF005A03-          TATTTTTACAGACAAGTAAAACAAAAAAGGGGGAAAAAAAAATAATTATTACAGCCTTCC
rJMSF033L02-          TATTTTTACAGACAAGTAAAACAAAAAAGGGGGAAAAAAAAATAATTATTACAGCCTTCC
rJMFF008H04-          TATTTTTACAGACAAGTAAAACAAAAAAGGGGGAAAAAAAAATAATTATTACAGCCTTCC
                      ____________________________________________________________
consensus             TATTTTTACAGACAAGTAAAACAAAAAAGGGGGAAAAAAAAATAATTATTACAGCCTTCC
 
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rJMFF005A03-          TGATTTCACTCCAGGAGAGACATTCATTCTCATTGTCCATTTGTCCCATATGTTCACTCC
rJMSF033L02-          NGATTTCACTCCAGGAGAGACATTCATTCTCATTGTCCATTTGTCCCATATGTTCACTCC
rJMFF008H04-          TGATTTCACTCCAGGAGAGACATTCATTCTCATTGTCCATTTGTCCCATATGTTCACTCC
                      ____________________________________________________________
consensus             TGATTTCACTCCAGGAGAGACATTCATTCTCATTGTCCATTTGTCCCATATGTTCACTCC
 
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rJMFF005A03-          CCGGGATCCACTCGCGCTTCCGTTCACTATGTTCATCCTATCTTACCAAGAAGCGACTTT
rJMSF033L02-          CCGGGATCCACTCGCGCTTCCGTTCACTATGTTCATCCTATCTTACCAAGAAGCGACTTT
rJMFF008H04-          CCGGGATCCACTCGCGCTTCCGTTCACTATGTTCATCCTATCTTACCAAGAAGCGACTTT
                      ____________________________________________________________
consensus             CCGGGATCCACTCGCGCTTCCGTTCACTATGTTCATCCTATCTTACCAAGAAGCGACTTT
 
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rJMFF005A03-          GCTTTCGATGCAGGGGTTCCCGGTTTAGCGGTTGTTGTGCTACCGAATCCAAACTTCGGC
rJMSF033L02-          GCTTTCGATGCAGGGGTTCCCGGTTTAGCGGTTGTTGTGCTACCGAATCCANACTTCGGC
rJMFF008H04-          GCTTTCGATGCAGGGGTTCCCGGTTTAGCGGTTGTTGTGCTACCGAATCCAAACTTCGGC
                      ____________________________________________________________
consensus             GCTTTCGATGCAGGGGTTCCCGGTTTAGCGGTTGTTGTGCTACCGAATCCAAACTTCGGC
 
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rJMFF005A03-          TTCTTCTCTGCGGGCTTTAATATTTGAAAAGAGCACATCAACGTCTCGTCAACGCTCATC
rJMSF033L02-          TTCTTCTCTGCGGGCTTTAATATTTGAAAAGAGCACATCAACGTCTCGTCAACGCTCATC
rJMFF008H04-          TTCTTCTCTGCGGGCTTTAATATTTGAAAAGAGCACATCAACGTCTCGTCAACGCTCATC
                      ____________________________________________________________
consensus             TTCTTCTCTGCGGGCTTTAATATTTGAAAAGAGCACATCAACGTCTCGTCAACGCTCATC
 
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rJMFF005A03-          ATGGCGCCAGCATTGTCAAACTCCCCGCAATAATTAGGAGCCGAGAATATCGTCACGAGT
rJMSF033L02-          ATGGCGCCAGCATTGTCAAACTCCCCGCAATAATTAGGAGCCGAGAATATCGTCACGAGT
rJMFF008H04-          ATGGCGCCAGCATTGTCAAACTCCCCGCAATAATTAGGAGCCGAGAATATCGTCACGAGT
                      ____________________________________________________________
consensus             ATGGCGCCAGCATTGTCAAACTCCCCGCAATAATTAGGAGCCGAGAATATCGTCACGAGT
 
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rJMFF005A03-          TGTCTGTCTGCAAAAAACTCGTATCCATCTTCAACGACCTGATGAGCACGGCAAATAAGA
rJMSF033L02-          TGTCTGTCTGCAAAAAACTCGTATCCATCTTCAACGACCTGATGAGCACGGCAAATAAGA
rJMFF008H04-          TGTCTGTCTGCAAAAAACTCGTATCCATCTTCAACGACCTGATGAGCACGGCAAATAAGA
JMSF033L02+                                                 CTGATGAGCACGGCAAATAAGA
                      ____________________________________________________________
consensus             TGTCTGTCTGCAAAAAACTCGTATCCATCTTCAACGACCTGATGAGCACGGCAAATAAGA
 
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rJMFF005A03-          TCGAGATCTTGTTTCTCGAGAAACTCGGTCACTCTATCAGCCCCGAAAGTGTAGGAGACT
rJMSF033L02-          TCGAGATCTTGTTTCTCGAGAAACTAGGNCACTCTATCAGCCCCGAAAGTGTAGGAGACT
rJMFF008H04-          TCGAGATCTTGTTTCTCGAGAAACTCGGTCACTCTATCAGCCCCGAAAGTGTAGGAGACT
JMSF033L02+           TCGAGATCTTGTTTCTCGAGAAACTAGGTCACTCTATCAGCCCCGAAAGTGTAGGAGACT
                      ____________________________________________________________
consensus             TCGAGATCTTGTTTCTCGAGAAACTAGGTCACTCTATCAGCCCCGAAAGTGTAGGAGACT
 
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rJMFF005A03-          CCCCTATCGTTCATCCCCCACCCTTTTACATCCTTACTAGGATCAGACCACAATAGATCA
rJMSF033L02-          CCCCTATCGTTCATCCCCCACCCTTTTACATCCTTACTAGGATCAGACCACAATAGATCA
rJMFF008H04-          CCCCTATCGTTCATCCCCCACCCTTTTACATCCTTACTAGGATCAGACCACAATAGATCA
JMSF033L02+           CCCCTATCGTTCATCCCCCACCCTTTTACATCCTTACTAGGATCAGACCACAATAGATCA
                      ____________________________________________________________
consensus             CCCCTATCGTTCATCCCCCACCCTTTTACATCCTTACTAGGATCAGACCACAATAGATCA
 
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rJMFF005A03-          CAAAGCAAACCAGTTTCTGGAA                                      
rJMSF033L02-          CAAAGCAAACCAGTTTCTGGAACATCTGTAGGTCGTTGTAGGCTTCTTATCTGATCCAAA
rJMFF008H04-          CAAAGCAAACCAGTTTCTGGAACATCTGTAGGTCGTTGTANGCTTCTTATCTGATCCAAA
JMSF033L02+           CAAAGCAAACCAGTTTCTGGAACATCTGTAGGTCGTTGTAGGCTTCTTATCTGATCCAAA
                      ____________________________________________________________
consensus             CAAAGCAAACCAGTTTCTGGAACATCTGTAGGTCGTTGTAGGCTTCTTATCTGATCCAAA
 
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rJMSF033L02-          TCATGCAAATC                                                 
rJMFF008H04-          TCATGCAAATCNGGGAGAAAGTCCCCCGTGCATGCACAAT                    
JMSF033L02+           TCATGCAAATC-GGGAGAAAGTCCCCCGTGCATGCACAATATCTTTTCATCGACCAGAGC
                      ____________________________________________________________
consensus             TCATGCAAATCNGGGAGAAAGTCCCCCGTGCATGCACAATATCTTTTCATCGACCAGAGC
 
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JMSF033L02+           TGCCACAGGCAGGCAGTTAAAACAATCTGTGAATACTTTCCATAACCGAACATTGAACCT
                      ____________________________________________________________
consensus             TGCCACAGGCAGGCAGTTAAAACAATCTGTGAATACTTTCCATAACCGAACATTGAACCT
 
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JMSF033L02+           CCGTTTGCACTCATCGTAAAATCCATATATACGATTAACAGAAGCACATTCATGGTTGCC
                      ____________________________________________________________
consensus             CCGTTTGCACTCATCGTAAAATCCATATATACGATTAACAGAAGCACATTCATGGTTGCC
 
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JMSF033L02+           CCTCAGAAGGAAAAAGTTTTCAGGATACTTAATCTTATAAGCAAGCAGAAGGCATATTGT
                      ____________________________________________________________
consensus             CCTCAGAAGGAAAAAGTTTTCAGGATACTTAATCTTATAAGCAAGCAGAAGGCATATTGT
 
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JMSF033L02+           TTCTAGACTTTGCTTCCCACGATCCACATAATCGCCCAAGAACAAGTAGTTAGATTTCGG
JMFF008H04+                           CCACGATCCACATAATCGCCCAAGAACAAGTAGTTAGATTTCGG
                      ____________________________________________________________
consensus             TTCTAGACTTTGCTTCCCACGATCCACATAATCGCCCAAGAACAAGTAGTTAGATTTCGG
 
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JMSF033L02+           AGGTAAACCGCCATATT-CAAAGAGCCTGAGTAGATCAGAATACTGACCATGAATATCCC
JMFF005A03+                             CAAAGAGCCTGAGTAGATCAGAATACTGACCATGAATATCCC
JMFF008H04+           AGGTAAACCGCCATATTCCAAAGAGCCTGAGTAGATCAGAATACTGACCATGAATATCCC
                      ____________________________________________________________
consensus             AGGTAAACCGCCATATTCCAAAGAGCCTGAGTAGATCAGAATACTGACCATGAATATCCC
 
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JMSF033L02+           CGCAGATCTTGATGGGTGCCTCAAGTTCAAGAAGATTAGGCTGGTGCAAGAAAATCTCCT
JMFF005A03+           CGCAGATCTTGATGGGTGCCTCAAGTTCAAGAAGATTAGGCTGGTGCAAGAAAATCTCCT
JMFF008H04+           CGCAGATCTTGATGGGTGCCTCAAGTTCAAGAAGATTAGGCTGGTGCAAGAAAATCTCCT
                      ____________________________________________________________
consensus             CGCAGATCTTGATGGGTGCCTCAAGTTCAAGAAGATTAGGCTGGTGCAAGAAAATCTCCT
 
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JMSF033L02+           TGGACTGCATACACAGCTGCCTGATCTCCGACTCGGAGAGCTGCAATTGCTTCCCGGGTC
JMFF005A03+           TGGACTGCATACACAGCTGCCTGATCTCCGACTCGGAGAGCTGCACTTGCTTCCCGGGTC
JMFF008H04+           TGGACTGCATACACAGCTGCCTGATCTCCGACTCGGAGAGCTGCACTTGCTTCCCGGGTC
                      ____________________________________________________________
consensus             TGGACTGCATACACAGCTGCCTGATCTCCGACTCGGAGAGCTGCACTTGCTTCCCGGGTC
 
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JMSF033L02+           TCCCCCTAACCTC                                               
JMFF005A03+           TCCCCCTAACCTCCAACAACCTCTTGATTATATCATCCAGAGCCACGGAATCCATAAAAT
JMFF008H04+           TCCCCCTAACCTCCAACAACCTCTTGATTATATCATCCAGAGCCACGGAATCCATAAAAT
JMFF025J20+                    CCTCCAACAACCTCTTGATTATATCNTCCAGAGCCNCGGAATCCATAAAAT
                      ____________________________________________________________
consensus             TCCCCCTAACCTCCAACAACCTCTTGATTATATCATCCAGAGCCACGGAATCCATAAAAT
 
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JMFF005A03+           CCCTCCTGTATCTGTGTATGTTTAGAGATTATGAGCTGGTGGGTGTGGGTGTATAGATCA
JMFF008H04+           CCCTCCTGTATCTGTGTATGTTTAGAGATTATGAGCTGGTGGGTGTGGGTGTATAGATCA
JMFF025J20+           CCCTCCNGTATCTGTGTATGTTTAGAGATTATGAGCTGGTGGGTGTGGGTGTATAGATCA
                      ____________________________________________________________
consensus             CCCTCCTGTATCTGTGTATGTTTAGAGATTATGAGCTGGTGGGTGTGGGTGTATAGATCA
 
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JMFF005A03+           AGATTGAGGAAGGGGAATAACAGCGCGCAGAAGAAAGAGGGAATAAAGTGGAGTGGAGCG
JMFF008H04+           AGATTGAGGAAGGGGAATAACAGCGCGCAGAAGAAAGAGGGAATAAAGTGGAGTGGAGCG
JMFF025J20+           AGATTGAGGAAGGGGAATANCAGCGCGCAGAAGAAAGAGGGAATAAAGTGGAGTGGAGCG
                      ____________________________________________________________
consensus             AGATTGAGGAAGGGGAATAACAGCGCGCAGAAGAAAGAGGGAATAAAGTGGAGTGGAGCG
 
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JMFF005A03+           GCGGATTAGCATCTCAGGGGAGTGAAAGACTTTAACTTTTTTCAAGGGCGTTTAGATGGA
JMFF008H04+           GCGGATTAGCATCTCAGGGGAGTGAAAGACTTTAACTTTTTTCAAGGGCGTTTAGATGGA
JMFF025J20+           GCGGATTAGCATCTCAGGGGAGNGAAAGACTTTANCTTTTTTCAAGGGCGTTTAGATGGA
                      ____________________________________________________________
consensus             GCGGATTAGCATCTCAGGGGAGTGAAAGACTTTAACTTTTTTCAAGGGCGTTTAGATGGA
 
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JMFF005A03+           AAGCTTTGGGTTTGTGAAAATGGCTTTTTTTTGGGTGATAGATGAGAACATTCGAGTCTA
JMFF008H04+           AAGCTTTGGGTTTGTGAAAATGGCTTTTTTTTGGGTGATAGATGAGAACATTCGAGTCTA
JMFF025J20+           AAGCTTTGGGTTTGTGAAAATGGCTTTTTTTTGGGTGATAGATGAGANCANTCGAGTCTA
                      ____________________________________________________________
consensus             AAGCTTTGGGTTTGTGAAAATGGCTTTTTTTTGGGTGATAGATGAGAACATTCGAGTCTA
 
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JMFF005A03+           TCGGTCCTGAGGGCAGCAGCGGCTGAGCTGAGAAATGAGACT                  
JMFF008H04+           TCGGTCCTGAGGGCAGCAGCGGCTGAGCTGAGAAATGAGACTATGAGAGAGAGAGAGAGA
JMFF025J20+           TCGGTCNNGAGGGCAGCAGCGGNTGAGNTGAGAAATGAGACTATGAGAGAGAGAGAGAGA
                      ____________________________________________________________
consensus             TCGGTCCTGAGGGCAGCAGCGGCTGAGCTGAGAAATGAGACTATGAGAGAGAGAGAGAGA
 
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JMFF008H04+           G                                                           
JMFF025J20+           GAGAGAGAGAGAGGGGGAGAGAGGTATGGTTAAAGACTCTCAGAGGGAGTGGAGTCAACA
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGGGGGAGAGAGGTATGGTTAAAGACTCTCAGAGGGAGTGGAGTCAACA