clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017L15 | Sequence | 564 | 001647 (6) | ref|XP_009782851.1| | 2e-28 | PREDICTED: lipid transfer-like protein VAS [Nicotiana sylvestris] | 715 | 001647 (6) | ref|XP_009782851.1| | 1e-27 | PREDICTED: lipid transfer-like protein VAS [Nicotiana sylvestris] |
JMFN006H10 | Sequence | 593 | 001647 (6) | ref|XP_009628632.1| | 3e-30 | PREDICTED: lipid transfer-like protein VAS [Nicotiana tomentosiformis] | |||||
JMFN010H23 | Sequence | 517 | 001647 (6) | ref|XP_009628632.1| | 5e-21 | PREDICTED: lipid transfer-like protein VAS [Nicotiana tomentosiformis] | |||||
JMFN034N06 | Sequence | 575 | 001647 (6) | ref|XP_009628632.1| | 2e-30 | PREDICTED: lipid transfer-like protein VAS [Nicotiana tomentosiformis] | |||||
JMFN036L16 | Sequence | 550 | 001647 (6) | ref|XP_009628632.1| | 1e-30 | PREDICTED: lipid transfer-like protein VAS [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFN010H23+ GAAGTTATAAGCTTTA
rJMFF017L15- TAAGCTTTA
____________________________________________________________
consensus GAAGTTATAAGCTTTA
. : . : . : . : . : . :
JMFN010H23+ TTTTCAGCTAAAAGAATATTTCAACAATCACAGGATATTCTGTCTATATATATGCCAAAT
rJMFF017L15- TTTTCAGCTAAAAGAATATTTCAACAATCACAGGATATTCTGTCTATATATATGCCAAAT
____________________________________________________________
consensus TTTTCAGCTAAAAGAATATTTCAACAATCACAGGATATTCTGTCTATATATATGCCAAAT
. : . : . : . : . : . :
JMFN010H23+ TCATATCAGAATTCACAAGTACAACACTGCACTGTTCTGCAAACAACACTCTGAGGTCTA
JMFN006H10+ GAGGTCTA
rJMFF017L15- TCATATCAGAATTCACAAGTACAACACTGCACTGTTCTGCAAACAACACTCTGAGGTCTA
____________________________________________________________
consensus TCATATCAGAATTCACAAGTACAACACTGCACTGTTCTGCAAACAACACTCTGAGGTCTA
. : . : . : . : . : . :
JMFN010H23+ ACTGCTGCTCAGAAATACTACCTCCATGAAAACCTGCAACAGTTTAAACACAAAAACTCC
JMFN034N06+ TCAGAAATACTACCTCCATGAAAACCTGCAACAGTTTAAACACAAAAACTCC
JMFN006H10+ ACTGCTGCTCAGAAATACTACCTCCATGAAAACCTGCAACAGTTTAAACACAAAAACTCC
JMFN036L16+ TTAAACACAAAAACTCC
rJMFF017L15- ACTGCTGCTCAGAAATACTACCTCCATGAAAACCTGCAACAGTTTAAACACAAAAACTCC
JMFF017L15+ CAACAGTTTAAACACAAAAACTCC
____________________________________________________________
consensus ACTGCTGCTCAGAAATACTACCTCCATGAAAACCTGCAACAGTTTAAACACAAAAACTCC
. : . : . : . : . : . :
JMFN010H23+ GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTTCAGCCCATG
JMFN034N06+ GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTTCAGCCCATG
JMFN006H10+ GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTTCAGCCCATG
JMFN036L16+ GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTTCAGCCCATG
rJMFF017L15- GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTCCAGCCCATG
JMFF017L15+ GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTCCAGCCCATG
____________________________________________________________
consensus GAATCTACCACAGTATTATAGACGCCCCGAGCAATAGCAAGCTGGAAACTTCAGCCCATG
. : . : . : . : . : . :
JMFN010H23+ CAAACCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
JMFN034N06+ CAAACCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
JMFN006H10+ CAAACCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
JMFN036L16+ CAAACCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
rJMFF017L15- CAAGCCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
JMFF017L15+ CAAGCCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
____________________________________________________________
consensus CAAACCTGCTTACTCCACTTGGTGTAGCTGGAGGCGGCTGCGGCACTGATGGAGGAGTGG
. : . : . : . : . : . :
JMFN010H23+ TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
JMFN034N06+ TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
JMFN006H10+ TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
JMFN036L16+ TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
rJMFF017L15- TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
JMFF017L15+ TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
____________________________________________________________
consensus TATTAGTAGCGGCGGTTGGACTCAAAGCTTTGTCGCAGGCGCTGACGTCATTGCTTATAC
. : . : . : . : . : . :
JMFN010H23+ CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
JMFN034N06+ CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
JMFN006H10+ CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
JMFN036L16+ CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
rJMFF017L15- CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
JMFF017L15+ CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
____________________________________________________________
consensus CGCAGTGCTTGGGAAGCTCAAGGGCCTGAGTGATGTTGACTCCGAGGGACTTCAACACTT
. : . : . : . : . : . :
JMFN010H23+ CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
JMFN034N06+ CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
JMFN006H10+ CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
JMFN036L16+ CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
rJMFF017L15- CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
JMFF017L15+ CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
____________________________________________________________
consensus CCGGGTTCTTATAGAGGTTGCAGAGGCAACTGAGCTCTTTAGTCACGGTTTCTTTGAGCG
. : . : . : . : . : . :
JMFN010H23+ GGTCGCAGCAGGAGGCGGGCG
JMFN034N06+ GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
JMFN006H10+ GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
JMFN036L16+ GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
rJMFF017L15- GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
JMFF017L15+ GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
____________________________________________________________
consensus GGTCGCAGCAGGAGGCGGGCGGTTTGGTGGAGTTGAGGTACTCAGCGCAGGGGACGAGGT
. : . : . : . : . : . :
JMFN034N06+ TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCTA
JMFN006H10+ TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCTA
JMFN036L16+ TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCCA
rJMFF017L15- TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCTA
JMFF017L15+ TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCTA
____________________________________________________________
consensus TGGAAGCGCAGGAGGTGGACTGGGCGGTGGCGGTGGCCGTCAACATTAGCACCGCCGCTA
. : . : . : . : . : . :
JMFN034N06+ GCGCCGCGATCGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
JMFN006H10+ GCGCCGCGATCGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
JMFN036L16+ CCCCCGCGATTGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
rJMFF017L15- GCGCCGCGATCGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
JMFF017L15+ GCGCCGCGATCGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
____________________________________________________________
consensus GCGCCGCGATCGCCGTCGCCAGCATTTTGGTGGAAGCCATGTTAAGCTTAGCGTAGAAGA
. : . : . : . : . : . :
JMFN034N06+ AACTAGACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGT
JMFN006H10+ AACTAGACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGTGA
JMFN036L16+ AACTAGACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGTGA
rJMFF017L15- AACTAAACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGTGA
JMFF017L15+ AACTAGACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGTGAGCTGTACGGGCTTGT
____________________________________________________________
consensus AACTAGACTCTCTCTTCTCGATCGGAATGGGCTGCGCCTTTGTGAGCTGTACGGGCTTGT