| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017I17 | Sequence | 575 | 001646 (7) | ref|XP_009631718.1| | 5e-82 | PREDICTED: ras-related protein RABA1f-like [Nicotiana tomentosiformis] | 798 | 001646 (7) | ref|XP_009790362.1| | 5e-144 | PREDICTED: ras-related protein RABA1f [Nicotiana sylvestris] |
| JMFN014F02 | Sequence | 527 | 001646 (7) | emb|CAA55865.1| | 1e-21 | Rab [Medicago sativa] | |||||
| JMFN014F03 | Sequence | 575 | 001646 (7) | ref|XP_009336164.1| | 1e-90 | PREDICTED: ras-related protein RABA1f-like [Pyrus x bretschneideri] | |||||
| JMFN035G05 | Sequence | 609 | 001646 (7) | ref|XP_009336164.1| | 2e-90 | PREDICTED: ras-related protein RABA1f-like [Pyrus x bretschneideri] | |||||
| JMSF005D05 | Sequence | 339 | 001646 (7) | gb|ACJ83325.1| | 2e-33 | unknown [Medicago truncatula] | 503 | 001646 (7) | ref|XP_009336164.1| | 1e-85 | PREDICTED: ras-related protein RABA1f-like [Pyrus x bretschneideri] |
This contig is upended
. : . : . : . : . : . :
JMFN035G05+ GCAAATAAG
____________________________________________________________
consensus GCAAATAAG
. : . : . : . : . : . :
JMFN035G05+ GTATGTTATAATGGTGTGAACTAAGATTTTGTGAGCCAATAAATGACAAACTTTAATGGC
JMFN014F03+ GTGAGCCAATAAATGACAAACTTTAATGGC
rJMFF017I17- AACTTTAATGGC
____________________________________________________________
consensus GTATGTTATAATGGTGTGAACTAAGATTTTGTGAGCCAATAAATGACAAACTTTAATGGC
. : . : . : . : . : . :
JMFN035G05+ CTGTCAATTTTATATATAATTGGAAGTGTTCAATAGCAACACAAGGATATAACTGAATAC
rJMSF005D05- AAGTGTTCAANAGCAACACAAGGATATAACTGAATAC
JMFN014F02+ ATTTTATATATAGTCGGCAGTGTTCTATAGCAACGCAAGTATATAATTGCATAC
JMFN014F03+ CTGTCAATTTTATATATAATTGGAAGTGTTCAATAGCAACACAAGGATATAACTGAATAC
rJMFF017I17- CTGTCAATTTTATATATAATTGGAAGTGTTCAATAGCAACACAAGGATATAACTGAATAC
____________________________________________________________
consensus CTGTCAATTTTATATATAATTGGAAGTGTTCAATAGCAACACAAGGATATAACTGAATAC
. : . : . : . : . : . :
JMFN035G05+ AAAAAGAACCTCAACTGCCATAGGATTAGGTATCTGCTCTAGCCTCTAAGCAGAGCAGCA
rJMSF005D05- AAAAAGAACCTCAACTGCCATAGGATTAGGTATCTGCTCTAGCCTCTAAGCAGAGCAGCA
JMFN014F02+ AAAAAGACCCTCAGCTGCCATAGGATTAGGTATGCGCTCTAGCCTTTAAGCAGAGCAGCA
JMFN014F03+ AAAAAGAACCTCAACTGCCATAGGATTAGGTATCTGCTCTAGCCTCTAAGCAGAGCAGCA
rJMFF017I17- AAAAAGAACCTCAACTGCCATAGGATTAGGTATCTGCTCTAGCCTCTAAGCAGAGCAGCA
____________________________________________________________
consensus AAAAAGAACCTCAACTGCCATAGGATTAGGTATCTGCTCTAGCCTCTAAGCAGAGCAGCA
. : . : . : . : . : . :
JMFN035G05+ ACCGGCCTTCTTTACT-GCTGAAACATCATCTTTACTCCCGACG-CTAATCGTCTGTCCC
rJMSF005D05- ACCGGCCTTCTTTACT-GCTGAAACATCATCTTTACTCCCGACG-CTAATCGTCTGTCCC
JMFN014F02+ TCCGGCCTTCTTCACTATCTGAAGCATCATCTTTACTCCCCACGTGTAATCGTATGTCCA
JMFN014F03+ ACCGGCCTTCTTTACT-GCTGAAACATCATCTTTACTCCCGACG-CTAATCGTCTGTCCC
rJMFF017I17- ACCGGCCTTCTTTACT-GCTGAAACATCATCTTTACTCCCGACG-CTAATCGTCTGTCCC
____________________________________________________________
consensus ACCGGCCTTCTTTACT-GCTGAAACATCATCTTTACTCCCGACG-CTAATCGTCTGTCCC
. : . : . : . : . : . :
JMFN035G05+ TTGGGCAAAGTTGCTTGGTCGTCCCCGGCTTCAAGAGATCTCTTGCTGACGACATGGTAT
rJMSF005D05- TTGGGCAAAGTTGCTTGGTCGTCCCCGGCTTCAAGAGATCTCTTGCTGACGACATGGTAT
JMFN014F02+ TTGGGCAAAGTTGCTTGGTCGTCCCCGTCTTCAAGAGATCTCTCGCTGAAGACATGGTAT
JMFN014F03+ TTGGGCAAAGTTGCTTGGTCGTCCCCGGCTTCAAGAGATCTCTTGCTGACGACATGGTAT
rJMFF017I17- TTGGGCAAAGTTGCTTGGTCGTCCCCGGCTTCAAGAGATCTCTTGCTGACGACATGGTAT
____________________________________________________________
consensus TTGGGCAAAGTTGCTTGGTCGTCCCCGGCTTCAAGAGATCTCTTGCTGACGACATGGTAT
. : . : . : . : . : . :
JMFN035G05+ ATTTGAGTGAGCACTTCTGTGAAGGCGTCTTCCACGTTCATGGACTCCAGGGCAGAGGTT
rJMSF005D05- ATTTGAGTGAGCACTTCTGTGAAGGCGTCTTCCACGTTCATGGACTCCAGGGCAGAGGTT
JMFN014F02+ ATTTGAGTGAGCCCTTCTGTCAAGGCGTCTTCCACGTTCATGAACTCCAGGCCATAGGTT
JMFN014F03+ ATTTGAGTGAGCACTTCTGTGAAGGCGTCTTCCACGTTCATGGACTCCAGGGCAGAGGTT
rJMFF017I17- ATTTGAGTGAGCACTTCTGTGAAGGCGTCTTCCACGTTCATGGACTCCAGGGCAGAGGTT
____________________________________________________________
consensus ATTTGAGTGAGCACTTCTGTGAAGGCGTCTTCCACGTTCATGGACTCCAGGGCAGAGGTT
. : . : . : . : . : . :
JMFN035G05+ TCCATGAAAAAAGTGGTCTCTCTTTCAGCAAATGCCTTGGCATCATCGGTTGAAACAGCT
rJMSF005D05- TCCATGAAAAAAGTGGTCTCTCTTTCAGCAAATGCCTTGGCATCATCGGTTGAAACAGCT
JMFN014F02+ TCCAT-AAAAAAGTGGTATCTCTTTCAGCAAATGCCTTGGCATCATCGGTTCACACAGAT
JMFN014F03+ TCCATGAAAAAAGTGGTCTCTCTTTCAGCAAATGCCTTGGCATCATCGGTTGAAACAGCT
rJMFF017I17- TCCATGAAAAAAGTGGTCTCTCTTTCAGCAAATGCCTTGGCATCATCGGTTGAAACAGCT
____________________________________________________________
consensus TCCATGAAAAAAGTGGTCTCTCTTTCAGCAAATGCCTTGGCATCATCGGTTGAAACAGCT
. : . : . : . : . : . :
JMFN035G05+ CGCAAGTGGCGCAAGTCTGCTTTGTTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
rJMSF005D05- CGCAAGTGGCGCAAGTCTGCTTTGTTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
JMFN014F02+ AGCAAGTGGCGCAAGTCTCCTTTGTTTTCCCCGAGCATGATGCCGATGCTGGAATCTGTG
JMFN014F03+ CGCAAGTGGCGCAAGTCTGCTTTGTTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
rJMFF017I17- CGCAAGTGGCGCAAGTCTGCTTTGTTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
JMFF017I17+ TTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
____________________________________________________________
consensus CGCAAGTGGCGCAAGTCTGCTTTGTTTCCCACGAGCATGATGACGATGCTGGAATCTGTG
. : . : . : . : . : . :
JMFN035G05+ TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
rJMSF005D05- TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
JMFN014F02+ TGGTAACGGAGTTCCTTCACCCATCTCTCACACGTTCTCTAAGGTACCATGACGAGTTAC
JMFN014F03+ TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
rJMFF017I17- TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
JMFF017I17+ TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
____________________________________________________________
consensus TGGTCGCGGAGCTCCTTCAACCATCTCTC-CACGTTTTCAAAGGTAACATGACGAGTGAC
. : . : . : . : . : . :
JMFN035G05+ ATCATAGACAAGCAATGCACCAACAGCTCCTCGATAGTAGGCACTTGTGATTGCACGATA
rJMSF005D05- ATCATAGACAAGCAATGCANCAACAGCTCCTCGATAGTANGCACTTGTG
JMFN014F02+ ATCATAGTCAAGCAATGCACCTCCAGCTCCTAGATAGTAGGCACTTGTGAT
JMFN014F03+ ATCATAGACAAGCAATGCACCAACAGCTCCTCGATAGTAGGCACTTGTGATTGCACGATA
rJMFF017I17- ATCATAGACAAGCAATGCACCAACAGCTCCTCGATAGTAGGCACTTGTGATTGCACGATA
JMFF017I17+ ATCATAGACAAGCAATGCACCAACAGCTCCTCGATAGTAGGCACTTGTGATTGCACGATA
____________________________________________________________
consensus ATCATAGACAAGCAATGCACCAACAGCTCCTCGATAGTAGGCACTTGTGATTGCACGATA
. : . : . : . : . : . :
JMFN035G05+ TC
JMFN014F03+ TC
rJMFF017I17- TCGTTCCTGGCCGGCGGTGTCCCAAATCTGAGCCTTAACGACCTTCTCGTCGACGCGGAT
JMSF005D05+ CCTTAACGACCTTCTCGTCGACGCGGAT
JMFF017I17+ TCGTTCCTGGCCGGCGGTGTCCCAAATCTGAGCCTTAACGACCTTCTCGTCGACGCGGAT
____________________________________________________________
consensus TCGTTCCTGGCCGGCGGTGTCCCAAATCTGAGCCTTAACGACCTTCTCGTCGACGCGGAT
. : . : . : . : . : . :
rJMFF017I17- GCTGCGAGTGGCGAACTCGACGCCGATGGTGGACTTAGACTCGAGGCTGAACTCGTTGCG
JMSF005D05+ GCTGCGAGTGGCGAACTCGACGCCGATGGTGGACTTAGACTCGAGGCTGAACTCGTTGCG
JMFF017I17+ GCTGCGAGTGGCGAACTCGACGCCGATGGTGGACTTAGACTCGAGGCTGAACTCGTTGCG
____________________________________________________________
consensus GCTGCGAGTGGCGAACTCGACGCCGATGGTGGACTTAGACTCGAGGCTGAACTCGTTGCG
. : . : . : . : . : . :
rJMFF017I17- AGTGAATCTGGAGAGAAGGTTGGATTTCCCGACGCCGGAGTCGCCGATCANCACCACCTT
JMSF005D05+ AGTGAATCTGGAGAGAAGGTTGGATTTCCCGACGCCGGAGTCGCCGATCAGCACCACCTT
JMFF017I17+ AGTGAATCTGGAGAGAAGGTTGGATTTCCCGACGCCGGAGTCGCCGATCAGCACCACCTT
____________________________________________________________
consensus AGTGAATCTGGAGAGAAGGTTGGATTTCCCGACGCCGGAGTCGCCGATCAGCACCACCTT
. : . : . : . : . : . :
rJMFF017I17- G
JMSF005D05+ GAACAAGTAGTCGTAATCGTCGTCCGCTCTGTACGCCCCCATTCTCCGTACCTATCTATT
JMFF017I17+ GAACAAGTAGTCGTAATCGTCGTCCGCTCTGTACGCCCCCATTCTCCGTACCTATCTATT
____________________________________________________________
consensus GAACAAGTAGTCGTAATCGTCGTCCGCTCTGTACGCCCCCATTCTCCGTACCTATCTATT
. : . : . : . : . : . :
JMSF005D05+ ACGCTGTACACTGCCAGGGGGTGGAGGAGTAGCTCTCCCTTCCCTCTCTCTGTATATGTG
JMFF017I17+ ACGCTGTACACTGCCAGGGGGTGGAGGAGTAGCTCTCCCTTCCCTCTCTCTGTATATGTG
____________________________________________________________
consensus ACGCTGTACACTGCCAGGGGGTGGAGGAGTAGCTCTCCCTTCCCTCTCTCTGTATATGTG
. : . : . : . : . : . :
JMSF005D05+ TGTGTGTATGCAGAGAAAGAGAGAGTGATGAATCTGAAGGACTGAAGGAGGAAGAAGGGG
JMFF017I17+ TGTGTGTATGCAGAGAAAGAGAGAGTGATGAATCTGAAGGACTGAAGGAGGAAGAAGGGG
____________________________________________________________
consensus TGTGTGTATGCAGAGAAAGAGAGAGTGATGAATCTGAAGGACTGAAGGAGGAAGAAGGGG
. : . : . : . : . : . :
JMSF005D05+ GGCCGCAAC
JMFF017I17+ GGCCGCAACGTTTGAAGGAGAGAGGAGGGAGATCTACTCAAAGCTGTTTCAGTACAATCC
____________________________________________________________
consensus GGCCGCAACGTTTGAAGGAGAGAGGAGGGAGATCTACTCAAAGCTGTTTCAGTACAATCC