Contig 001618:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M05Sequence356001618 (5)ref|XP_009790737.1|83.2PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]653012785 (3)ref|XP_006366766.1|2e-51PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum]
JMFF013L06Sequence517001618 (5)ref|XP_009790737.1|176PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]753012785 (3)ref|XP_004243223.1|296PREDICTED: transmembrane 9 superfamily member 4 [Solanum lycopersicum]
JMFS042H11Sequence623001618 (5)ref|XP_009790737.1|265PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS168B01Sequence625001618 (5)ref|XP_009790737.1|341PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMSF051G21Sequence651001618 (5)ref|XP_009790737.1|268PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]741012785 (3)ref|XP_009602688.1|211PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS168B01+                                                               CCACTCCA
                      ____________________________________________________________
consensus                                                                 CCACTCCA
 
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JMFS168B01+           GCTCCCTCATACTCGTGAATCAGAACTGTAAATTTCAGGTGGTTAATGATGTAATCATCT
                      ____________________________________________________________
consensus             GCTCCCTCATACTCGTGAATCAGAACTGTAAATTTCAGGTGGTTAATGATGTAATCATCT
 
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JMFS168B01+           TTACTATTTGGTGGTGTATAGCCAACCGGAAACCCAGTCCACTGTATCTTCATTCCATTT
JMFS042H11+                                                            TCATTCCATTT
JMSF051G21+                                                            TCATTCCATTT
                      ____________________________________________________________
consensus             TTACTATTTGGTGGTGTATAGCCAACCGGAAACCCAGTCCACTGTATCTTCATTCCATTT
 
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JMFS168B01+           TGGGTGGCATATCTCAAAGCAGGCAAGTTATCCAGGATCATATTCACCTGATAAAGCTCA
JMFS042H11+           GGGGTGGCATATCTCAAAGCAGGCAAGTTATCCAGGATCATATTCACCTGATAAAGCTCA
JMSF051G21+           TGGGTGGCATATCTCANAGCAGGCAAGTTATCCAGGATCATATTCACCTGATAAAGCTCA
                      ____________________________________________________________
consensus             TGGGTGGCATATCTCAAAGCAGGCAAGTTATCCAGGATCATATTCACCTGATAAAGCTCA
 
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JMFS168B01+           TGGGTCCTCTGTTTCAAGAGCTTTACCTCATTCTCATTTAGTCCGGGGGTAGTGCAGAGG
JMFS042H11+           TGGGTCCTCTGTTTCAAGAGCTTTACCTCATTCTCATTTAGTCCGGGGGTAGTGCAGAGG
JMSF051G21+           TGGGTCCTCTGTTTCAAGAGCTTTACCTCATTCTCATTTAGTCCGGGGGTAGTGCAGAGG
                      ____________________________________________________________
consensus             TGGGTCCTCTGTTTCAAGAGCTTTACCTCATTCTCATTTAGTCCGGGGGTAGTGCAGAGG
 
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JMFS168B01+           TAAAGTGATTCATTAACATTCATCCTGAAACGGTAGGGAGAGGTATCAATCTGATCTCCC
JMFS042H11+           TAAAGTGATTCATTAACATTCATCCTGAAACGGTAGGGAGAGGTATCAATCTGATCTCCC
JMSF051G21+           TAAAGTGATTCATTAACATTCATCCTGAAACGGTAGGGAGAGGTATCAATCTGATCTCCC
JMFF013L06+                                  CCTGAAACGGTAGGGAGAGGTATCAATCTGATCTCCC
                      ____________________________________________________________
consensus             TAAAGTGATTCATTAACATTCATCCTGAAACGGTAGGGAGAGGTATCAATCTGATCTCCC
 
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JMFS168B01+           ATTAACAGTTCTCCAAGATTCTCGGCACTTTTCTTGATGCCACTCTGAGGTTTGCAGTAA
JMFS042H11+           ATTAACAGTTCTCCAAGATTCTCGGCACTTTTCTTGATGCCACTCTGAGGTTTGCAGTAA
JMSF051G21+           ATTAACAGTTCTCCAAGATTCTCGGCACTTTTCTTGATGCCACTCTGAGGTTTGCAGTAA
JMFF013L06+           ATTAACAGTTCTCCAAGATTCTCGGCACTTTTCTTGATGCCACTCTGAGGTTTGCAGTAA
                      ____________________________________________________________
consensus             ATTAACAGTTCTCCAAGATTCTCGGCACTTTTCTTGATGCCACTCTGAGGTTTGCAGTAA
 
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JMFS168B01+           GGAAGACTATAATAGCTGAATGGGAGCTCAGTCTCAATTGAGGTTAACGAGTTCACTTTG
JMFS042H11+           GGAAGACTATAATAGCTGAATGGGAGCTCAGTCTCAATTGAGGTTAACGAGTTCACTTTG
JMSF051G21+           GGAAGACTATAATAGCTGAATGGGAGCTCAGTCTCAATTGAGGTTAACGAGTTCACTTTG
JMFF002M05+                                                             GTTCACTTTG
JMFF013L06+           GGAAGACTATAATAGCTGAATGGGAGCTCAGTCTCAATTGAGGTTAACGAGTTCACTTTG
                      ____________________________________________________________
consensus             GGAAGACTATAATAGCTGAATGGGAGCTCAGTCTCAATTGAGGTTAACGAGTTCACTTTG
 
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JMFS168B01+           ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
JMFS042H11+           ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
JMSF051G21+           ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
JMFF002M05+           ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
JMFF013L06+           ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
                      ____________________________________________________________
consensus             ACAACAATTTCATCACCAGTGGAGTATGTATGCATATAGGTACCCGGCAAATAAAACCCA
 
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JMFS168B01+           TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
JMFS042H11+           TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
JMSF051G21+           TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
JMFF002M05+           TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
JMFF013L06+           TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
                      ____________________________________________________________
consensus             TTACAAGCATGTGAAATGAGAACGAAATATAAGAATGCAGCCAAGTATCTCCTTCCCGAG
 
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JMFS168B01+           ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTCTAAGCCACTAGTA
JMFS042H11+           ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTCTAAGCCACTAGTA
JMSF051G21+           ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTCTAAGCCACTAGTA
JMFF002M05+           ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTGTAAGCCACTAGTA
JMFF013L06+           ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTCTAAGCCACTAGTA
                      ____________________________________________________________
consensus             ATTGATGACAATGCCATTGCTAGACAAGATGGAGGAGACAGGCCCTCTAAGCCACTAGTA
 
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JMFS168B01+           GTAACACAGAAATCATC                                           
JMFS042H11+           GTAACACAGAAATCATCAATCGGAGCTGGATCTGGAAATGAAGAGCGAGCTCAGAGCGAA
JMSF051G21+           GTAACACAGAAATCATCAATCGGAGCTGGATCTGGAAATGAAGAGCGAGCTCAGAGCGAA
JMFF002M05+           GTAACACAGAAATCATCAATCGGAGCTGGATCTGGAAATGAAGAGCGAGCTCAGAGCGAA
JMFF013L06+           GTAACACAGAAATCATCAATCGGAGCTGGATCTGGAAATGAAGAGCGAGCTCAGAGCGAA
                      ____________________________________________________________
consensus             GTAACACAGAAATCATCAATCGGAGCTGGATCTGGAAATGAAGAGCGAGCTCAGAGCGAA
 
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JMFS042H11+           TCAGCTCGGCGAAACTTGTCGGTGAGATCGGGCTGGTTAGCCTTTGATGATTGAGAATGG
JMSF051G21+           TCAGCTCGGCGAAACTTGTCGGTGAGATCGGGCTGGTTAGCCTTTGATGATTGAGAATGN
JMFF002M05+           TCAGCTCGGCGAAACTTGTCGGTGAGATCGGGCTGGTTAGCCTTTGATGATTGAGAATGG
JMFF013L06+           TCAGCTCGGCGAAACTTGTCGGTGAGATCGGGCTGGTTAGCCTTTGATGATTGAGAATGG
                      ____________________________________________________________
consensus             TCAGCTCGGCGAAACTTGTCGGTGAGATCGGGCTGGTTAGCCTTTGATGATTGAGAATGG
 
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JMFS042H11+           TTGGGAGAGGAA                                                
JMSF051G21+           TTGGGAGAGGAAGGAGTAGTGAAAGAGCGCGTGAAC                        
JMFF002M05+           TTGGGAGAGGAAGGAGTAGTGAAAGAGCGCGTGAACTGT                     
JMFF013L06+           TTGGGAGAGGAAGGAGTAGTGAAAGAGCGCGTGAACTGTGAAAAATGAAGATGGCAAATT
                      ____________________________________________________________
consensus             TTGGGAGAGGAAGGAGTAGTGAAAGAGCGCGTGAACTGTGAAAAATGAAGATGGCAAATT