Contig 001590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009B07Sequence511001590 (2)622019068ref|XP_009784282.1|2e-20PREDICTED: protein RFT1 homolog isoform X3 [Nicotiana sylvestris]
JMFF029G12Sequence525001590 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF029G12+ CCAACGAA
                      ____________________________________________________________
consensus CCAACGAA
 
. : . : . : . : . : . :
JMFF029G12+ GATGCCGATTTCGACATCCCTAGACTATGGACTTCTTTGATTATCCGGATTGGTTGATTT
JMFF009B07+ GACTTCTTTGATTATCCGGATTGGTTGATTT
                      ____________________________________________________________
consensus GATGCCGATTTCGACATCCCTAGACTATGGACTTCTTTGATTATCCGGATTGGTTGATTT
 
. : . : . : . : . : . :
JMFF029G12+ CGAAATGGAGTGCCGCAGTGATCATCAGAGTGCAACAGCACAAGGTAAAATTAGGGTTTT
JMFF009B07+ CGAAATGGAGTGCCGCAGTGATCATCAGAGTGCAACAGCACAAGGTAAAATTAGGGTTTT
                      ____________________________________________________________
consensus CGAAATGGAGTGCCGCAGTGATCATCAGAGTGCAACAGCACAAGGTAAAATTAGGGTTTT
 
. : . : . : . : . : . :
JMFF029G12+ GAGGTCACTTAATAAGTAGACCAACTCATAGTCCATCAACCCAATTTCCCTGACCCGACC
JMFF009B07+ GAGNTCACTTAATAAGTAGACCAACTCATAGTCCATCAACCCAATTTCCCTGACCCGACC
                      ____________________________________________________________
consensus GAGGTCACTTAATAAGTAGACCAACTCATAGTCCATCAACCCAATTTCCCTGACCCGACC
 
. : . : . : . : . : . :
JMFF029G12+ GGATTAACCGGGGTCACCTTCGAAAGGCGGCTATCGATGACGACTGCCGGACGGATTACG
JMFF009B07+ GGATTAACCGGGGTCACCTTCGAAAGGCGGCTATCGATGACGACTGCCGGACGGATTACG
                      ____________________________________________________________
consensus GGATTAACCGGGGTCACCTTCGAAAGGCGGCTATCGATGACGACTGCCGGACGGATTACG
 
. : . : . : . : . : . :
JMFF029G12+ GAAGGCCGGCAAAGCTGGATAATATGGACTAATGGACCGAAATCTCAATGGCGGCTTAAG
JMFF009B07+ GAAGGCCGGCAAAGCTGGATAATATGGACTAATGGACCGAAATCTCAATGGCGGCTTAAG
                      ____________________________________________________________
consensus GAAGGCCGGCAAAGCTGGATAATATGGACTAATGGACCGAAATCTCAATGGCGGCTTAAG
 
. : . : . : . : . : . :
JMFF029G12+ GTGAGAATTGAAATCGAGACGGAGCGGAGCTTGGACGCCGCGGGAGAAGACGTGGTTGGA
JMFF009B07+ GTGAGAATTGAAATCGAGACGGAGCGGAGCTTGGACGCCGCGGGAGAAGACGTGGTTGGA
                      ____________________________________________________________
consensus GTGAGAATTGAAATCGAGACGGAGCGGAGCTTGGACGCCGCGGGAGAAGACGTGGTTGGA
 
. : . : . : . : . : . :
JMFF029G12+ AGTTGAAGATGGAAGAGATCAGCGGAAAAATTTCAGCAGCGACGTCGATACCGAGGCTTG
JMFF009B07+ AGTTGAAGATGGAAGAGATCAGCGGAAAAATTTCAGCAGCGACGTCGATACCGAGGCTTG
                      ____________________________________________________________
consensus AGTTGAAGATGGAAGAGATCAGCGGAAAAATTTCAGCAGCGACGTCGATACCGAGGCTTG
 
. : . : . : . : . : . :
JMFF029G12+ ACAGACGACCCCGTAATACGGAGTAACAAATAGACGCCTGAAATTCGTTCACTGTTCAAT
JMFF009B07+ ACAGACGACCCCGTAATACGGAGTAACAAATAGACGCCTGAAATTCGTTCACTGTTCAAT
                      ____________________________________________________________
consensus ACAGACGACCCCGTAATACGGAGTAACAAATAGACGCCTGAAATTCGTTCACTGTTCAAT
 
. : . : . : . : . : . :
JMFF029G12+ GGCCGGAGCCCGGAGCCCCGGAGTAGCGCCGTTCAAC
JMFF009B07+ GGCCGGAGCCCGGAGCCCCGGAGTAGCGCCGTTCAACAAAGAGTGTGGCAATGTAAGAAT
                      ____________________________________________________________
consensus GGCCGGAGCCCGGAGCCCCGGAGTAGCGCCGTTCAACAAAGAGTGTGGCAATGTAAGAAT