Contig 001579:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006O01Sequence531001579 (7)ref|NP_001234581.1|2e-52TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript620008213 (8)ref|XP_002268058.1|4e-07PREDICTED: transcription factor TCP7 [Vitis vinifera]
JMFF010K11Sequence581001579 (7)ref|NP_001234581.1|1e-58TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript691008213 (8)ref|XP_009789878.1|1e-16PREDICTED: transcription factor TCP7-like [Nicotiana sylvestris]
JMFF019P20Sequence503001579 (7)ref|NP_001234581.1|1e-52TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript643008213 (8)ref|XP_002268058.1|2e-05PREDICTED: transcription factor TCP7 [Vitis vinifera]
JMFF023F04Sequence523001579 (7)ref|NP_001234581.1|2e-52TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript682008213 (8)ref|NP_001233810.1|5e-10TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript
JMFF027J21Sequence534001579 (7)ref|NP_001234581.1|3e-53TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript606008213 (8)ref|NP_001233810.1|3e-10TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript
JMFF032M17Sequence526001579 (7)ref|XP_009588219.1|2e-52PREDICTED: transcription factor TCP7-like [Nicotiana tomentosiformis]727008213 (8)ref|XP_009789878.1|9e-23PREDICTED: transcription factor TCP7-like [Nicotiana sylvestris]
JMFF041F11Sequence646001579 (7)ref|NP_001234581.1|9e-66TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript620008213 (8)ref|NP_001233810.1|9e-12TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript

Alignment

This contig is upended


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JMFF041F11+                 GACAGTGGCTGTGCCGGCGACGTCGTCCTTGTTCCCACCTCCGTCGAGACCATC
                      ____________________________________________________________
consensus                   GACAGTGGCTGTGCCGGCGACGTCGTCCTTGTTCCCACCTCCGTCGAGACCATC
 
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JMFF041F11+           TTCCTCTGAGCGGAGGCGCTTCCCGAGAATGAAGGGAGCGGATGAAATCAAGGAGTGGGA
JMFF010K11+                              TTCCCGAGAATGAAGGGAGCGGATGAAATCAAGGAGTGGGA
                      ____________________________________________________________
consensus             TTCCTCTGAGCGGAGGCGCTTCCCGAGAATGAAGGGAGCGGATGAAATCAAGGAGTGGGA
 
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JMFF019P20+                  TGATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
JMFF041F11+           CGGCTTCTGATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
JMFF027J21+                  TGATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
JMFF023F04+                    ATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCNTGAC
JMFF010K11+           CGGCTTCTGATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
JMFF032M17+                     TCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
JMFF006O01+                    ATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
                      ____________________________________________________________
consensus             CGGCTTCTGATCGAGCGGCGCGGAGATAGAAGGGCTGGTGGTGGAGGAGGAGTTCCTGAC
 
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JMFF019P20+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF041F11+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF027J21+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF023F04+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF010K11+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF032M17+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
JMFF006O01+           CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
                      ____________________________________________________________
consensus             CGAGACAGAGACAGTAGAGAAGCTAGCAGGGATGGTGCCAGTACCAGTGGCGGCTATAAT
 
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JMFF019P20+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF041F11+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF027J21+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF023F04+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF010K11+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF032M17+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
JMFF006O01+           AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
                      ____________________________________________________________
consensus             AGATGGCTCGGCCTGGCGGAGGAGCCACTCAATAGTCTGGCCATCGGATTTGTGGCCGAG
 
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JMFF019P20+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF041F11+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF027J21+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF023F04+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF010K11+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF032M17+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
JMFF006O01+           CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
                      ____________________________________________________________
consensus             CTCCCTTGTGAGCTGAAATACTCTGGCGGCGCACACAATCGGCATGCGTATGCGTCTGCC
 
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JMFF019P20+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTTTTGACAACTAAGGCTCC
JMFF041F11+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
JMFF027J21+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
JMFF023F04+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
JMFF010K11+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
JMFF032M17+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
JMFF006O01+           TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
                      ____________________________________________________________
consensus             TCGGCCATCAACCTTGCTATGGCGGTCCTTGGCGGGCGGCTTCTTGACAACTAAGGCTCC
 
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JMFF019P20+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF041F11+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF027J21+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF023F04+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF010K11+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF032M17+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
JMFF006O01+           ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
                      ____________________________________________________________
consensus             ATTGGAGGGCGGCGGCTGCTGCTGCCTCTGCTTTGGGTCAATAATCGCACCATTAGCTTC
 
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JMFF019P20+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
JMFF041F11+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
JMFF027J21+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
JMFF023F04+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGCCTGCTAGCAAATAGCAATACACCCG
JMFF010K11+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
JMFF032M17+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
JMFF006O01+           CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
                      ____________________________________________________________
consensus             CGCCGACGTGGACATAGCGCCGCCAATGGATGGGTCTGCTAGCAAATAGCAATACACCCG
 
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JMFF019P20+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
JMFF041F11+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
JMFF027J21+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
JMFF023F04+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
JMFF010K11+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
JMFF032M17+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTA---CAGCAGCAGCAGCAGCAGCAGC
JMFF006O01+           AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
                      ____________________________________________________________
consensus             AGTAGGTGTTTGAGAAAAATACTGAAAGAATGGTACAGCAGCAGCAGCAGCAGCAGCAGC
 
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JMFF019P20+           AGCAGGAGATGAAGATGAAGATTAGAGAGT                              
JMFF041F11+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAAT        
JMFF027J21+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAATGGGGGG  
JMFF023F04+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAAT        
JMFF010K11+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAATGGGGGG  
JMFF032M17+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAATGGGGGG  
JMFF006O01+           AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAATGGGGGGAA
                      ____________________________________________________________
consensus             AGCAGGAGATGAAGATGAAGATTAGAGAGTAAAATTGGTGAGTAATGGGAATGGGGGGAA