Contig 001563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D18Sequence252001563 (10)626001563 (10)
JMFF037G16Sequence506001563 (10)
JMFF048M17Sequence577001563 (10)511001563 (10)
JMFN014B11Sequence621001563 (10)
JMFN017H15Sequence617001563 (10)
JMFN032B21Sequence582001563 (10)ref|XP_003627732.1|1e-19ATP synthase subunit beta [Medicago truncatula]
JMFN041P09Sequence626001563 (10)
JMFS070F12Sequence627001563 (10)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF048M17- CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
                      ____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
 
. : . : . : . : . : . :
JMFN032B21+ GCAGAATATATAAATAATGAACACTACAAGA
rJMFF048M17- TTTTTATAAAAGGAAATTATTGTATAGAAGCAGAATATATAAATAATGAACACTACAAGA
rJMFF004D18- GCAGAATATATAAATAATGAACACTACAAGA
                      ____________________________________________________________
consensus TTTTTATAAAAGGAAATTATTGTATAGAAGCAGAATATATAAATAATGAACACTACAAGA
 
. : . : . : . : . : . :
JMFN032B21+ GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
rJMFF048M17- GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCGATAAGGCAAA
rJMFF004D18- GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
                      ____________________________________________________________
consensus GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
 
. : . : . : . : . : . :
JMFN032B21+ TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF048M17- TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF037G16- ACGCCCGAAGTCGAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF004D18- TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
JMFN014B11+ GTATAATTAAT
                      ____________________________________________________________
consensus TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
 
. : . : . : . : . : . :
JMFN032B21+ ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF048M17- ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF037G16- NTCTATATATCANAATCNTCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF004D18- ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
JMFN014B11+ ATCTATATATCAAAATCATCAACAATATGGTGATGGGTGCAATTTATTCTTGTATGGTCT
JMFN017H15+ ATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
JMFN041P09+ ATCATCAACAATATGGTGATGGGTGNCAATTATTCTTGTATGGTCT
                      ____________________________________________________________
consensus ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
 
. : . : . : . : . : . :
JMFN032B21+ CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF048M17- CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF037G16- CTAAAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF004D18- CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCACGT
JMFF048M17+ CAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN014B11+ CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN017H15+ CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN041P09+ CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
                      ____________________________________________________________
consensus CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
 
. : . : . : . : . : . :
JMFN032B21+ CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF048M17- CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF037G16- CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF004D18- CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFF048M17+ CACCTTCATGGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN014B11+ CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN017H15+ CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN041P09+ CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFS070F12+ CTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
                      ____________________________________________________________
consensus CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
 
. : . : . : . : . : . :
JMFN032B21+ GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
rJMFF048M17- GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
rJMFF037G16- GTTANGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGNTGGAGC
rJMFF004D18- GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFF048M17+ GTTAGGTCCGGGGGCTGGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN014B11+ GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN017H15+ GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN041P09+ GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFS070F12+ GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
                      ____________________________________________________________
consensus GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
 
. : . : . : . : . : . :
rJMFF048M17- CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCG
rJMFF037G16- CTGANTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGNGCGGGAGA
rJMFF004D18- CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFF048M17+ CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN014B11+ CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN017H15+ CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN041P09+ CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFS070F12+ CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
                      ____________________________________________________________
consensus CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
 
. : . : . : . : . : . :
rJMFF037G16- CTGCACGGGAGTGGCTGCCGGNGGANAGGATACCGGAGCCGAATCAGGTGAGGACAATGG
rJMFF004D18- CTGCACGGGAGCGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFF048M17+ CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN014B11+ CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN017H15+ CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN041P09+ CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFS070F12+ CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
                      ____________________________________________________________
consensus CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
 
. : . : . : . : . : . :
rJMFF037G16- TGTCTGGGCANGCGGGGATACAGGCGCGG-GGCCGGANCATTGGCCTGGGGANCGGAAAC
rJMFF004D18- TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFF048M17+ TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN014B11+ TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN017H15+ TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN041P09+ TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFS070F12+ TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFF004D18+ GGGAGCGGAAAC
                      ____________________________________________________________
consensus TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
 
. : . : . : . : . : . :
rJMFF037G16- TGCNATACGTGGAGCCAAAGCAGGAGCCGGAGA
rJMFF004D18- TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCC
JMFF048M17+ TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN014B11+ TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN017H15+ TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN041P09+ TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCTGCCGG
JMFS070F12+ TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFF004D18+ TGCAATACGTGGANCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
                      ____________________________________________________________
consensus TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
 
. : . : . : . : . : . :
JMFF048M17+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN014B11+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN017H15+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN041P09+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFS070F12+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFF004D18+ AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
                      ____________________________________________________________
consensus AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
 
. : . : . : . : . : . :
JMFF048M17+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATC
JMFN014B11+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFN017H15+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFN041P09+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFS070F12+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFF004D18+ GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
                      ____________________________________________________________
consensus GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
 
. : . : . : . : . : . :
JMFN014B11+ ACAGAGAGGA
JMFN017H15+ ACAGAGAGGAGGTTTTGTTAC
JMFN041P09+ ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGA
JMFS070F12+ ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGA
JMFF004D18+ ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGATGAAATAAGTTTTCGAGATC
                      ____________________________________________________________
consensus ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGATGAAATAAGTTTTCGAGATC