Contig 001554:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M14Sequence673001554 (6)ref|XP_011075125.1|2e-92PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]739005499 (6)ref|XP_009766466.1|4e-110PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF026L22Sequence520001554 (6)ref|XP_011075125.1|6e-93PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]742005499 (6)ref|XP_002279533.2|1e-123PREDICTED: DNA polymerase delta small subunit isoform X2 [Vitis vinifera]
JMFF030I12Sequence276001554 (6)ref|XP_009618766.1|2e-38PREDICTED: DNA polymerase delta small subunit isoform X3 [Nicotiana tomentosifo626005499 (6)ref|XP_009766466.1|1e-96PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF038O17Sequence571001554 (6)ref|XP_009618766.1|3e-100PREDICTED: DNA polymerase delta small subunit isoform X3 [Nicotiana tomentosifo697005499 (6)ref|XP_009766466.1|1e-84PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF042J02Sequence643001554 (6)ref|XP_011075125.1|3e-115PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]610005499 (6)ref|XP_002279533.2|4e-69PREDICTED: DNA polymerase delta small subunit isoform X2 [Vitis vinifera]
JMFF042P21Sequence610001554 (6)ref|XP_011075125.1|5e-108PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]

Alignment

This contig is upended


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JMFF002M14+                                                          CCAGTTATATGAT
                      ____________________________________________________________
consensus                                                            CCAGTTATATGAT
 
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JMFF042J02+                           CTGTAGAGGATTGGAGGTGCTGCTCCCAACACTCAAACCAGAGA
JMFF042P21+                                                            CAAACCAGAGA
JMFF002M14+           CAATTAAAAGCTGAAACTGTAGAGGATNGGAGGTGCTGCTCCCAACACTCAAACCAGAGA
                      ____________________________________________________________
consensus             CAATTAAAAGCTGAAACTGTAGAGGATTGGAGGTGCTGCTCCCAACACTCAAACCAGAGA
 
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JMFF042J02+           TGAATACCACATACTTGTCTTCATCTGATTGAAGTGGTTGCTCTATTTGTTGTGCTAGGT
JMFF038O17+                                       TTGAAGTGGTTGCTCTATTTGTTGTGCTAGGT
JMFF042P21+           TGAATACCACATACTNGTCTTCATCTGATTGAAGTGGTTGCTCTATTTGTTGTGCTAGGT
JMFF002M14+           TGAATACCACATACTTGTCTTCATCTGATTGAAGTGGTTGCTCTATTTGTTGTGCTAGGT
                      ____________________________________________________________
consensus             TGAATACCACATACTTGTCTTCATCTGATTGAAGTGGTTGCTCTATTTGTTGTGCTAGGT
 
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JMFF042J02+           CAGCCTCTAGAACATCTACAA-CCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
JMFF038O17+           CAGCCTCTAGAACATCTACAA-CCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
JMFF026L22+                               AACCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
JMFF042P21+           CAGCCTCTAGAACATCTACAA-CCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
JMFF002M14+           CAGCCTCTAGAACATCTACAACCCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
                      ____________________________________________________________
consensus             CAGCCTCTAGAACATCTACAA-CCAGAAAATCACCAGCAGTAGTTTCTTTTCCATGTAAT
 
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JMFF042J02+           GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACTCAGTTTGACT
JMFF038O17+           GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACTCAGTTTGACT
JMFF026L22+           GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACCCAGTTTGACT
JMFF042P21+           GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACTCAGTTTGACT
JMFF002M14+           GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACTCAGTTTGACT
                      ____________________________________________________________
consensus             GCCACAACAAGCCCTGTTACATATGTCGAAGGCAATAACAAACTGCCACTCAGTTTGACT
 
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JMFF042J02+           CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
JMFF038O17+           CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
JMFF026L22+           CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
JMFF042P21+           CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
JMFF002M14+           CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
                      ____________________________________________________________
consensus             CTTCCACTCTCATCTTCCAAAACTAAATAATCATCCGAGTGCACAAAATTGTGATTCTGT
 
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JMFF042J02+           GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
JMFF038O17+           GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
JMFF026L22+           GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
JMFF042P21+           GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
JMFF002M14+           GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
                      ____________________________________________________________
consensus             GCAAGCGGTGTAGCAGATCTCCCCTTAGAGTACTCATCAAGAACGGAAGGTTTAAGCTTC
 
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JMFF042J02+           ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
JMFF038O17+           ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
JMFF026L22+           ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
JMFF042P21+           ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
JMFF030I12+                                   ATAATGCATTCTTTCCCTTCCTNTAATCCCAGAACA
JMFF002M14+           ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
                      ____________________________________________________________
consensus             ATGTGCTTGTAGAGGGTCCCAACAATAATGCATTCTTTCCCTTCCTCTAATCCCAGAACA
 
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JMFF042J02+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
JMFF038O17+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
JMFF026L22+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
JMFF042P21+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
JMFF030I12+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
JMFF002M14+           GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
                      ____________________________________________________________
consensus             GTACAGACAGGTAAATGGGGTTTCCAATTTGGGAGGAGAGAGTAGAGGAGAGTTCTCATC
 
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JMFF042J02+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
JMFF038O17+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
JMFF026L22+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
JMFF042P21+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
JMFF030I12+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTNTGA
JMFF002M14+           AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
                      ____________________________________________________________
consensus             AAGTGAAGTCTAGCAAAATATATCTGGCTGTACTGTTGACCCCTGTACATTAACTTCTGA
 
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JMFF042J02+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
JMFF038O17+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
JMFF026L22+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
JMFF042P21+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
JMFF030I12+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
JMFF002M14+           ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
                      ____________________________________________________________
consensus             ATCTGAAAGCTTTCATCCAAGGATTTGTAGATAGACTGTTTCCTCTGGAGGATGCCGTAG
 
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JMFF042J02+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
JMFF038O17+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
JMFF026L22+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
JMFF042P21+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
JMFF030I12+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
JMFF002M14+           CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC
                      ____________________________________________________________
consensus             CTCTCCGAGTCCACTTCCATGGCGACCATGGCGGGAAAAGACGCTCTGCAATTTCGGTAC