Contig 001553:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M03Sequence554001553 (3)767012259 (2)ref|XP_008393692.1|6e-20PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Malus domesti
JMFF012J23Sequence563001553 (3)766012259 (2)ref|XP_008393692.1|3e-19PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Malus domesti
JMSF053E07Sequence680001553 (3)ref|XP_007018428.1|2e-40Integrase-type DNA-binding superfamily protein [Theobroma cacao] gb|EOY15653.1| 664005739 (10)ref|XP_011099392.1|1e-85PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF053E07+ AAGGTGGAGAAGTAAGAATGGTGGGTTTGGGGTTC
                      ____________________________________________________________
consensus AAGGTGGAGAAGTAAGAATGGTGGGTTTGGGGTTC
 
. : . : . : . : . : . :
JMSF053E07+ NTGAAGAAAGTCAAAAGCCCTATGCCTTGCAGCTTCTTGTGGGTCAGGGTTATGATAGTA
                      ____________________________________________________________
consensus NTGAAGAAAGTCAAAAGCCCTATGCCTTGCAGCTTCTTGTGGGTCAGGGTTATGATAGTA
 
. : . : . : . : . : . :
JMSF053E07+ AATACTGTCTAAGCTTAGAGCCATGGCTTCCCTCTCATGGCTTCCAAACTGATTGTCCCC
                      ____________________________________________________________
consensus AATACTGTCTAAGCTTAGAGCCATGGCTTCCCTCTCATGGCTTCCAAACTGATTGTCCCC
 
. : . : . : . : . : . :
JMSF053E07+ CATTGTTGCACCTCCCAGAAAGTCCTCCAACTTTGGACTGCCATTTGGCACCATACCATT
                      ____________________________________________________________
consensus CATTGTTGCACCTCCCAGAAAGTCCTCCAACTTTGGACTGCCATTTGGCACCATACCATT
 
. : . : . : . : . : . :
JMSF053E07+ TGGGTGGGATCTTGAGAGGGGCTGCATAATACAAAGAGAACCATCTGACTTGAGAGGCAT
                      ____________________________________________________________
consensus TGGGTGGGATCTTGAGAGGGGCTGCATAATACAAAGAGAACCATCTGACTTGAGAGGCAT
 
. : . : . : . : . : . :
JMSF053E07+ AACAGGAAGGGGGAAATGAAAGGCAGAGGCTTCTCCAACCCCATAGCACAGAGAGGGAGA
JMFF012J23+ AACCCCATAGCACAGAGAGGGAGA
JMFF002M03+ GGGAGA
                      ____________________________________________________________
consensus AACAGGAAGGGGGAAATGAAAGGCAGAGGCTTCTCCAACCCCATAGCACAGAGAGGGAGA
 
. : . : . : . : . : . :
JMSF053E07+ AAGGTGGAAGCTTGAAGCTGCAG-CCATGGCTGCTGTTGTTGAAGAAGGAGAAGAAACCT
JMFF012J23+ AAGGTGGAAGCTTGAAGCTGCAG-CCATGGCTGCTGTTGTTGAAGAAGGAGAAGAAACCT
JMFF002M03+ AAGGTGGAAGCTTGAAGCTGCAGCCCATGGCTGCTGTTGTTGAAGAAGGAGAAGAAACCT
                      ____________________________________________________________
consensus AAGGTGGAAGCTTGAAGCTGCAG-CCATGGCTGCTGTTGTTGAAGAAGGAGAAGAAACCT
 
. : . : . : . : . : . :
JMSF053E07+ CCATTTTCATATGGGGTGAGAGAGAAAATCCCAGCCAACTATTATTGCCACCACCATTGT
JMFF012J23+ CCATTTTCATATGGGGTGAGAGAGAAAATCCCAGCCAACTATTATTGCCACCACCATTGT
JMFF002M03+ CCATTTTCATATGGGGTGAGAGAGAAAATCCCAGCCAACTATTATTGCCACCACCATTGT
                      ____________________________________________________________
consensus CCATTTTCATATGGGGTGAGAGAGAAAATCCCAGCCAACTATTATTGCCACCACCATTGT
 
. : . : . : . : . : . :
JMSF053E07+ TCTCATTATTATTATTACCATTACTGTTCTTATCATTCATAGCTTCTCAAGTTTGAATCT
JMFF012J23+ TCTCATTATTATTATTACCATTACTGTTCTTATCATTCATAGCTTCTCAAGTTTGAATCT
JMFF002M03+ TCTCATTATTATTATTACCATTACTGTTCTTATCATTCATAGCTTCTCAAGTTTGAATCT
                      ____________________________________________________________
consensus TCTCATTATTATTATTACCATTACTGTTCTTATCATTCATAGCTTCTCAAGTTTGAATCT
 
. : . : . : . : . : . :
JMSF053E07+ TTTGAGTTTTGTCTCTCTCCTACTTTCCTTGGGCTCCAAGAAGTGTTTCC
JMFF012J23+ TTTGAGTTTTGTCTCTCTCCTACTTTCCTTGGGCTCCAAGAAGTGTTTCCTGGGATTGAA
JMFF002M03+ TTTGAGTTTTGTCTCTCTCCTACTTTCCTTGGGCTCCAAGAAGTGTTTCCTGGGATTGAA
                      ____________________________________________________________
consensus TTTGAGTTTTGTCTCTCTCCTACTTTCCTTGGGCTCCAAGAAGTGTTTCCTGGGATTGAA
 
. : . : . : . : . : . :
JMFF012J23+ GAAACTCAATCATTGGGTCGAAAAATACAGCAATCATTTCACTTCAACACAGAAAATATG
JMFF002M03+ GAAACTCAATCATTGGGTCGAAAAATACAGCAATCATTTCACTTCAACACAGAAAATATG
                      ____________________________________________________________
consensus GAAACTCAATCATTGGGTCGAAAAATACAGCAATCATTTCACTTCAACACAGAAAATATG
 
. : . : . : . : . : . :
JMFF012J23+ CACACAGAAAGAAATCATCATCTCCTTCTTCATCATTTTATCTCAGAACTCACCAAAGAT
JMFF002M03+ CACACAGAAAGAAATCATCATCTCCTTCTTCATCATTTTATCTCAGAACTCACCAAAGAT
                      ____________________________________________________________
consensus CACACAGAAAGAAATCATCATCTCCTTCTTCATCATTTTATCTCAGAACTCACCAAAGAT
 
. : . : . : . : . : . :
JMFF012J23+ TTTTGTAGTCTAGCTGCAGAAGAAGATGATGATGAGAAGCTGCTCTCCCATTTCCCTTCT
JMFF002M03+ TTTTGTAGTCTAGCTGCAGAAGAAGATGATGATGAGAAGCTGCTCTCCCATTTCCCTTCT
                      ____________________________________________________________
consensus TTTTGTAGTCTAGCTGCAGAAGAAGATGATGATGAGAAGCTGCTCTCCCATTTCCCTTCT
 
. : . : . : . : . : . :
JMFF012J23+ ATCTGTGAAAGCCCCTCCACAAACTATCTTCTCTCTCTCTCTATCTCTCTCTCTAAAATA
JMFF002M03+ ATCTGTGAAAGCCCCTCCACAAACTATCTTCTCTCTCTCTCTATCTCTCTCTCTAAAATA
                      ____________________________________________________________
consensus ATCTGTGAAAGCCCCTCCACAAACTATCTTCTCTCTCTCTCTATCTCTCTCTCTAAAATA
 
. : . : . : . : . : . :
JMFF012J23+ ATAAAACTGGTCGCTTTAAACTAAACAAAGAGAATGAGTTTCAGCGAGCAACCCCCTTCC
JMFF002M03+ ATAAAACTGGTCGCTTTAAACTAAACAAAGAGAATGAGTTTCAGCGAGCAACCCCCTTCC
                      ____________________________________________________________
consensus ATAAAACTGGTCGCTTTAAACTAAACAAAGAGAATGAGTTTCAGCGAGCAACCCCCTTCC