Contig 001548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001M18Sequence529001548 (5)ref|XP_009592200.1|2e-79PREDICTED: ras-related protein RABH1b [Nicotiana tomentosiformis]
JMFF027J24Sequence524001548 (5)ref|XP_010559077.1|2e-78PREDICTED: ras-related protein RABH1b [Tarenaya hassleriana]256018028
JMSF012O01Sequence376005218 (7)ref|XP_009614819.1|67.8PREDICTED: uncharacterized protein LOC104107662 [Nicotiana tomentosiformis]748001548 (5)ref|XP_004229706.1|9e-91PREDICTED: ras-related protein RABH1b [Solanum lycopersicum]
JMSF028G01Sequence641001548 (5)ref|XP_006354635.1|7e-111PREDICTED: ras-related protein RABH1b-like [Solanum tuberosum]761001548 (5)ref|XP_004229706.1|2e-113PREDICTED: ras-related protein RABH1b [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF012O01- TATCCTTGAATCTAATAAAACTGCTTTTTGTTATACAAAA
                      ____________________________________________________________
consensus TATCCTTGAATCTAATAAAACTGCTTTTTGTTATACAAAA
 
. : . : . : . : . : . :
rJMSF012O01- CTGCAAAAATCCATACAAATTTTGACCAAAAGGGGTGGCATAGGTCTATAACTGATATAG
rJMSF028G01- AAATTTTGACCAAAAGGGGTGGCATAGGTCTATAACTGATATAG
                      ____________________________________________________________
consensus CTGCAAAAATCCATACAAATTTTGACCAAAAGGGGTGGCATAGGTCTATAACTGATATAG
 
. : . : . : . : . : . :
rJMSF012O01- AAATGACTCGCAAGTAAACTATAATGGTAATCTACTATATGTTCAACACTTTCTGATAGA
rJMSF028G01- AAATGACTCGCAAGTAAACTATAATGGTAATCTACTATATGTTCAACACTTTCTGATAGA
                      ____________________________________________________________
consensus AAATGACTCGCAAGTAAACTATAATGGTAATCTACTATATGTTCAACACTTTCTGATAGA
 
. : . : . : . : . : . :
rJMSF012O01- TCAACAATGGCTAGGACTCAAATGCAATCAAGGACAGGCTTTACAGATCCGCTTTAGGTT
rJMSF028G01- TCAACAATGGCTAGGACTCAAATGCAATCAAGGACAGGCTTTACAGATCCGCTTTAGGTT
                      ____________________________________________________________
consensus TCAACAATGGCTAGGACTCAAATGCAATCAAGGACAGGCTTTACAGATCCGCTTTAGGTT
 
. : . : . : . : . : . :
rJMSF012O01- CAAAGGCAGCATGTAAGATCCAGACACGGGATTGAGATGTTCAAACATGTTGTTAACAGG
rJMSF028G01- CAAAGGCAGCATGTAAGATCCAGACACGGGATTGAGATGTTCAAACATGTTGTTAACAGG
                      ____________________________________________________________
consensus CAAAGGCAGCATGTAAGATCCAGACACGGGATTGAGATGTTCAAACATGTTGTTAACAGG
 
. : . : . : . : . : . :
rJMSF012O01- CACATCCTCCTGACTGTTGTGACTGTGCAGGATTTGTACTGCTTGACTTGAGGTTCACAT
rJMSF028G01- CACATCCTCCTGACTGTTGTGACTGTGCAGGATTTGTACTGCTTGACTTGAGGTTCACAT
                      ____________________________________________________________
consensus CACATCCTCCTGACTGTTGTGACTGTGCAGGATTTGTACTGCTTGACTTGAGGTTCACAT
 
. : . : . : . : . : . :
rJMSF012O01- CAACCATGTCGTCTTGCTTAGCTGACGATAATGTCTCCATTCCTGGCAGGGCTGCAGCAA
rJMSF028G01- CAACCATGTCGTCTTGCTTAGCTGACGATAATGTCTCCATTCCTGGCAAGGCTGCAGCAA
                      ____________________________________________________________
consensus CAACCATGTCGTCTTGCTTAGCTGACGATAATGTCTCCATTCCTGGCAGGGCTGCAGCAA
 
. : . : . : . : . : . :
rJMSF012O01- TTTTCCTAAATAGTGGCTTTATATTGAAGCCAGCCTTTGCACTGGTTTCAATAAACATGA
rJMSF028G01- TTTTCCTAAATAGTGGCTTTATATTGAAGCCAGCCTTTGCACTGGTTTCAATAAACATGA
JMSF028G01+ AGTGGCTTTATATTGAAGCCAGCCTTTGCACTGGTTTCAATAAACATGA
                      ____________________________________________________________
consensus TTTTCCTAAATAGTGGCTTTATATTGAAGCCAGCCTTTGCACTGGTTTCAATAAACATGA
 
. : . : . : . : . : . :
rJMSF012O01- CATTTAGTTCCCGCGATTTAGCTTCTCCCTCCTCTATTGAAACTTGCCTTTTTTCAACAA
rJMSF028G01- CATTTAGTTCCCGCGATTTAGCTTCTCCCTCCTCTATTGAAACTTGCCTTTTTTCAACAA
JMSF028G01+ CATTTAGTTCCCGCGATTTAGCTTCTCCCTCCTCTATTGAAACTTGCCTTTTTTCAACAA
                      ____________________________________________________________
consensus CATTTAGTTCCCGCGATTTAGCTTCTCCCTCCTCTATTGAAACTTGCCTTTTTTCAACAA
 
. : . : . : . : . : . :
rJMSF012O01- GGTCAGTTTTATTCCCAACAAGAACAATGATAACATCACTCCCACGCTCAGTTCGAACCT
rJMSF028G01- GGTCAGTTTTATTCCCAACAAGAACAATGATAACATCACTCCCACGCTCAGTTCGAACCT
JMSF028G01+ GGTCAGTTTTATTCCCAACAAGAACAATGATAACATCACTCCCACGCTCAGTTCGAACCT
JMFF027J24+ AACAAGGACAATTATAACATCACTCCCACGCTCAGTCCGAACCT
JMFF001M18+ TTCCCAACAAGGACAATTATAACATCACTCCCACGCTCAGTCCGAACCT
                      ____________________________________________________________
consensus GGTCAGTTTTATTCCCAACAAGAACAATGATAACATCACTCCCACGCTCAGTTCGAACCT
 
. : . : . : . : . : . :
rJMSF012O01- CCTCAATCCACTTTGCAGTATTAAGGAAGGACTGCCTACTTGCAACATCATACACAATAA
rJMSF028G01- CCTCAATCCACTTTGCAGTATTAAGGAAGGACTGCCTACTTGCAACATCATACACAATAA
JMSF028G01+ CCTCAATCCACTTTGCAGTATTAAGGAAGGACTGCCTACTTGCAACATCATACACAATAA
JMFF027J24+ CCTCTACCCACTTTGAAGTGTTAAGGAAAGACTGCCGGCTTGCAACATCATACACAATAA
JMFF001M18+ CCTCTACCCACTTTGAAGTGTTAAGGAAAGACTGCCGGCTTGCAACATCATACACAATAA
                      ____________________________________________________________
consensus CCTCAATCCACTTTGCAGTATTAAGGAAGGACTGCCTACTTGCAACATCATACACAATAA
 
. : . : . : . : . : . :
rJMSF012O01- CAGCAACAGATGAGTCCCTGATGTAGCTTGGTATAAGACTCCTAAATCTCTCTTGCCCTG
rJMSF028G01- CAGCAACAGATGAGTCCCTGATGTAGCTTGGTATAAGACTCCTAAATCTCTCTTGCCCTG
JMSF028G01+ CAGCAACAGATGAGTCCCTGATGTAGCTTGGTATAAGACTCCTAAATCTCTCTTGCCCTG
JMFF027J24+ CAGCAACAGATGAGTCCCTAATATAGCTGGGTATAAGACTCCTGAATCTCTCTTGCCCTG
JMFF001M18+ CAGCAACAGATGAGTCCCTAATATAGCTGGGTATAAGACTCCTGAATCTCTCTTGCCCTG
                      ____________________________________________________________
consensus CAGCAACAGATGAGTCCCTGATGTAGCTTGGTATAAGACTCCTAAATCTCTCTTGCCCTG
 
. : . : . : . : . : . :
rJMSF012O01- CAGTATCCCAANGCTGCAGTCTNACTGTACGATCTTCA
rJMSF028G01- CAGTATCCCAAAGCTGCAGTCTTACTGTACGATCTTCAAGGTACATTGTCTTTGACAGGA
JMSF028G01+ CAGTATCCCAAAGCTGCAGTCTTACTGTACGATCTTCAAGGTACATTGTCTTTGACAGGA
JMFF027J24+ CTGTATCCCAAAGCTGCAATCTCACTGTACGATCTTCAAGGTACATTGTCTTTGACAGGA
JMFF001M18+ CTGTATCCCAAAGCTGCAATCTCACTGTACGATCTTCAAGGTACATTGTCTTTGACAGGA
                      ____________________________________________________________
consensus CAGTATCCCAAAGCTGCAGTCTTACTGTACGATCTTCAAGGTACATTGTCTTTGACAGGA
 
. : . : . : . : . : . :
rJMSF028G01- AATCAATGCCAATTGTTGCCTGGTATGTGTTATCGAACTGGTCGTACATAAAGCGAG
JMSF028G01+ AATCAATGCCAATTGTTGCCTGGTATGTGTTATCGAACTTGTCGTACATAAAGCGAGTGA
JMFF027J24+ AATCAATACCAATAGTTGCCTGATAAGTGGTATCGAATTTATCGTACATGAAGCGAGTAA
JMFF001M18+ AATCAATACCAATAGTTGCCTGATAAGTGGTATCGAATTTATCGTACATGAAGCGAGTAA
                      ____________________________________________________________
consensus AATCAATGCCAATTGTTGCCTGGTATGTGTTATCGAACTTGTCGTACATAAAGCGAGTAA
 
. : . : . : . : . : . :
JMSF028G01+ TGATACTGGTTTTGCCGACAGACTGGTCTCCTAAGAAGACGAGCTTGTACTTAGCGAGGG
JMFF027J24+ TGATACTGGTTTTCCCCACGGATTGATCTCCTAAGAATACGAGCTTGTACTTGGCAAGAG
JMFF001M18+ TGATACTGGTTTTCCCCACGGATTGATCTCCTAAGAATACGAGCTTGTACTTGGCAAGAG
                      ____________________________________________________________
consensus TGATACTGGTTTTCCCCACGGATTGATCTCCTAAGAATACGAGCTTGTACTTGGCAAGAG
 
. : . : . : . : . : . :
JMSF028G01+ CGGAAACCGGAGCCATCAATCTGATC
JMFF027J24+ CCGAAACTGGAGCCATCTATCTGATCTACTCGTTTGACTTCTGGATTATGAAATCCGTGG
JMFF001M18+ CCGAAACTGGAGCCATCTATCTGATCTACTCGTTTGACTTCTGGATTATGAAATCCGTGG
                      ____________________________________________________________
consensus CCGAAACTGGAGCCATCTATCTGATCTACTCGTTTGACTTCTGGATTATGAAATCCGTGG
 
. : . : . : . : . : . :
JMFF027J24+ ATCGGATCAGGACTTTTCCGACGGAGTATTTTATAAATCGCCGGAAAATGATCGGAGGCG
JMFF001M18+ ATCGGATCAGGACTTTTCCGACGGAGTATTTTATAAATCGCCGGAAAATGATCGGAGGCG
                      ____________________________________________________________
consensus ATCGGATCAGGACTTTTCCGACGGAGTATTTTATAAATCGCCGGAAAATGATCGGAGGCG
 
. : . : . : . : . : . :
JMFF027J24+ CGTCGAAGACAGCAATGTGAGAGAGGGACGTGCGTTCTAGACTTCTAGGTATTTGTATTC
JMFF001M18+ CGTCGAAGACAGCAATGTGAGAGAGGGACGTGCGTTCTAGACTTCTAGGTATTTGTATTC
                      ____________________________________________________________
consensus CGTCGAAGACAGCAATGTGAGAGAGGGACGTGCGTTCTAGACTTCTAGGTATTTGTATTC