Contig 001535:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003A03Sequence253001535 (6)
JMCP004H09Sequence280001535 (6)
JMCP007D06Sequence284001535 (6)
JMCP016A06Sequence287001535 (6)
JMCP016B04Sequence273001535 (6)
JMCP018E06Sequence295001535 (6)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP018E06+ CGAACAATAAAATCAAACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
rJMCP016A06+ AACTTGTAATTTTGATCATGCGTTGGTACGGTGCtAtTTt
rJMCP007D06+ AACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
JMCP016B04+ AATTTTGATCATGCGTTGGTACGGTGCAAATTA
JMCP003A03+ GGTGCAAATTA
rJMCP004H09+ AACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAtTTA
                      ____________________________________________________________
consensus CGAACAATAAAATCAAACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
 
. : . : . : . : . : . :
rJMCP018E06+ AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP016A06+ AtTTAAATAAACAtCGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP007D06+ AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
JMCP016B04+ AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
JMCP003A03+ AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP004H09+ AATTAAATAAACAtCGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
                      ____________________________________________________________
consensus AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
 
. : . : . : . : . : . :
rJMCP018E06+ CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP016A06+ CCAGCgagTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP007D06+ CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
JMCP016B04+ CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
JMCP003A03+ CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP004H09+ CCAGCgagTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
                      ____________________________________________________________
consensus CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
 
. : . : . : . : . : . :
rJMCP018E06+ GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
rJMCP016A06+ GTGCgttCTGCAAACGTTGCCGTTTTGagTGCtgTGCGTACCGTACGCGTTTTCGCgttA
rJMCP007D06+ GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
JMCP016B04+ GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
JMCP003A03+ GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
rJMCP004H09+ GTGCCAtCTGCAAACGTTGCCGTTTTGagTGCACTGCGTACCGTACGCGTTTTCGCCAAA
                      ____________________________________________________________
consensus GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
 
. : . : . : . : . : . :
rJMCP018E06+ CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
rJMCP016A06+ gtttaGGAAGAAGCgtaAATAcCTTAGATTGTCGGTTTGtGCCGTAgtcTCGGAGTCCGG
rJMCP007D06+ CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACGGTCGGAGTCCGG
JMCP016B04+ CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
JMCP003A03+ CAAGTGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
rJMCP004H09+ gtttTGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTAgtcTCGGAGTCCGG
                      ____________________________________________________________
consensus CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG