| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP011C06 | Sequence | 190 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | 203 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine |
| JMCP011C12 | Sequence | 190 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | 203 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine |
| JMCP011D04 | Sequence | 199 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | 203 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine |
| JMCP011E07 | Sequence | 118 | 000072 (162) | 167 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP011E10 | Sequence | 198 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | 203 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine |
| JMCP011G03 | Sequence | 144 | 001524 (27) | 181 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP011G06 | Sequence | 115 | 001524 (27) | 157 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP011H02 | Sequence | 190 | 001524 (27) | ref|XP_010927690.1| | 7e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | 203 | 001524 (27) | ref|XP_010927690.1| | 8e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine |
| JMCP012A10 | Sequence | 113 | 001524 (27) | 190 | 001524 (27) | ref|XP_010927690.1| | 4e-11 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP012C06 | Sequence | 135 | 001524 (27) | ||||||||
| JMCP012D01 | Sequence | 186 | 001524 (27) | 191 | 001524 (27) | ref|XP_010927690.1| | 1e-10 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP012D05 | Sequence | 144 | 001524 (27) | 185 | 001524 (27) | ||||||
| JMCP012E01 | Sequence | 154 | 001524 (27) | 193 | 001524 (27) | ref|XP_010927690.1| | 9e-12 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||
| JMCP012E10 | Sequence | 189 | 001524 (27) | ref|XP_010927690.1| | 5e-09 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X7 [Elaeis guine | |||||
| JMCP012F02 | Sequence | 142 | 001524 (27) | 193 | 001524 (27) | ||||||
This contig is upended
. : . : . : . : . : . :
rJMCP011H02+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP011D04+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP011C12+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP011C06+ TCACTTCGGCCCGAGAACCTCTTGGCA
JMCP011D04- TTCGGCCCGAGAACCTCTTGGCA
JMCP011E10- TCGGCCCGAGAACCTCTTGGCA
rJMCP012E01+ TCACTTCGGCCCGAGAACCTCTTGGCA
JMCP011C12- AGAACCTCTTGGCA
JMCP011H02- AGAACCTCTTGGCA
JMCP011C06- AGAACCTCTTGGCA
rJMCP011G03+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP012D05+ aagcGCCCGAGAACCTCTTGGCA
rJMCP012D01+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP012C06+ TCACTTCGGCCCGAGAAggagTTGGCA
rJMCP012E10+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP012A10+ TCtCTagGGCCCGAGAACCTCTTGGCA
rJMCP011E07+ TCACTTCGGCCCGAGAACCTgaaccgA
rJMCP011G06+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP012F02+ TCACTTCGGCCCGAGAACCTCTTGGCA
rJMCP011E10+ TCACTTCGGCCCGAGAACCTCTTGGCA
____________________________________________________________
consensus TCACTTCGGCCCGAGAACCTCTTGGCA
. : . : . : . : . : . :
rJMCP011H02+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP011D04+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP011C12+ AGGGAAATTCTGCAGGCACAacGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP011C06+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011D04- AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011E10- AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP012E01+ AGGGAAATagTGCAGGCACAaccgtcggTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011C12- AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011H02- AGGGAAATTCacgAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011C06- AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP011G03+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP012D05+ AGGGAAtaaCaGgtccgtgtacgggggag--gtGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP012D01+ AGGGAAATTCacgtccgtgtgccgggggag-gtGAGTGTTCCTTATGCAAGT-GAGATAC
rJMCP012C06+ AGGGAAATagacgtcggtggggggggggag-gtGAGTGaaggaataccgttGTGAGATAg
rJMCP012E10+ AGGGAAATagacgtcgggggggggggggag-gtGAGTGTTgCTTATGCAAGT-GAGATAC
rJMCP012A10+ AGGGAAATagacgtccgtgtgccgggggag-gtGAGTGaTCCTTATGCAAGT-GAGATAC
rJMCP011E07+ AGGGAAATTCaGCAGGCACtaccgAGCCTC-CAGAGTGTTggaTATcCAAGT-GAGAaAC
rJMCP011G06+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP012E01- GCAGCCTC-CAGAGTGTTCCTTATGCAtca-ctctaAC
rJMCP012F02+ AGGGAAATTCTGgtccgtgtaccgggggagcgtcAGTGTTCCTTATGCAAGT-GAGATAC
JMCP012F02- GTGTTCCTTATGCAtca-ctctTAC
JMCP012D05- GAGTGTTCCTTATcgttcg-ctatatg
JMCP012D01- accgtcCCTC-CAGAGTGTTCCTTATGgttcaggtatatg
rJMCP011E10+ AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
JMCP011G03- GAGTGTTCCTTATGCAAGT-GAGATAC
____________________________________________________________
consensus AGGGAAATTCTGCAGGCACATGGCAGCCTC-CAGAGTGTTCCTTATGCAAGT-GAGATAC
. : . : . : . : . : . :
rJMCP011H02+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011D04+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011C12+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011C06+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011D04- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011E10- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012E01+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011C12- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011H02- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011C06- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011G03+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012D05+ AATCc---gtccaaatcCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012D01+ AATCG-CAcgcTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012C06+ ttagcgtcagcaATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CC
rJMCP012E10+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012A10+ ttagc-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGgcgaggcCCGGGGGTC
rJMCP011E07+ AATCG-CAGCGTATTAGCCtTGGTtccCGgccgcGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011G06+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP012E01- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP012F02+ ttagcggtcCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP012F02- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP012D05- ttTgG-CtcgcaAaTtcgCATGGTAGcCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP012D01- AATgc-gtcCGTATTtcgCATGGTAGGCGCGGCGGCGGCGGgccCGC-CCGCCGGGGGTC
JMCP011G06- CG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP012A10- CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
rJMCP011E10+ AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
JMCP011G03- AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
____________________________________________________________
consensus AATCG-CAGCGTATTAGCCATGGTAGGCGCGGCGGCGGCGGCGGCGC-CCGCCGGGGGTC
. : . : . : . : . : . :
rJMCP011H02+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
rJMCP011D04+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
rJMCP011C12+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
rJMCP011C06+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP011D04- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP011E10- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCcctGTTGAGGCGGGAT
rJMCP012E01+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTT
JMCP011C12- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP011H02- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP011C06- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
rJMCP011G03+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCG
rJMCP012D05+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGG
rJMCP012D01+ GGAGAGGTAGACGGAACGcgGGgGGGTGGAGGCGATCGAGCGGCGGAG
rJMCP012E10+ GGAGAGGTAGACGGAAgccgccgcGGTGGAGGCGATCGAGCGGCGG
rJMCP012A10+ GGAGAGGTAGACGGttgcctccgGGGTGGAGGCGATCGAGCGGCGG
rJMCP011E07+ GGAGAGGTAGACGGAACGGCGGCG
rJMCP011G06+ GGAGAGGTAGACGG
JMCP012E01- GGAGAGGTActCGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
rJMCP012F02+ GGAGAGGTAGACGGttgccgccCGGGTGGAGGCGATCGAGCGGCGGAG
JMCP012F02- GGActGGTAGACGGAACGGCGGCGGcTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP012D05- GGtctGGTtctgGGAACGGCGGCGGGTGGAGGgctTCGAGCGGgcctcaactGGCGGGAT
JMCP012D01- GGActGcatctgccttgcGCGGCGGGTGGAGGCGATgctGCGGCGGAcaTGAGGCGGGAT
JMCP011G06- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
JMCP012A10- GGAGAGGatctgGGAACGGCGGCGGGTGGAGGCGATCGAGgccgccccaactGcgcGGAT
rJMCP011E10+ GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCcctcaTGAGGCGGGAT
JMCP011G03- GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT
____________________________________________________________
consensus GGAGAGGTAGACGGAACGGCGGCGGGTGGAGGCGATCGAGCGGCGGAGTTGAGGCGGGAT