Contig 001518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002A01Sequence498001518 (10)ref|XP_002311516.1|1e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP004A03Sequence507001518 (10)ref|XP_002311516.1|5e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP004B05Sequence383001518 (10)ref|XP_002311516.1|6e-13high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP004G03Sequence507001518 (10)ref|XP_002311516.1|1e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP004H04Sequence509001518 (10)ref|XP_002311516.1|1e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP007F04Sequence506001518 (10)ref|XP_002311516.1|1e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP007G04Sequence508001518 (10)ref|XP_002311516.1|2e-18high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP017E11Sequence506001518 (10)ref|XP_002311516.1|2e-18high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP017G07Sequence506001518 (10)ref|XP_002311516.1|9e-20high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMCP017G12Sequence506001518 (10)ref|XP_002311516.1|9e-20high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP004H04+ CTCATAATTTATCACCTTGGAACTAACTA
rJMCP017G12+ ATAATTTATCACCTTGGAACTAACTA
rJMCP017G07+ ATAATTTATCACCTTGGAACTAACTA
rJMCP007F04+ TAATTTATCACCTTGGAACTAACTA
rJMCP017E11+ TAATTTATCACCTTGGAACTAACTA
rJMCP002A01+ TCACCTTccttgattCaA
rJMCP004G03+ ATAATTTATCACCTTGGAACTAACTA
rJMCP004A03+ TAATTTATCACCTTGGAACTAACTA
JMCP007G04+ ATAATTTATCACCTTGGAACTAACTA
                      ____________________________________________________________
consensus CTCATAATTTATCACCTTGGAACTAACTA
 
. : . : . : . : . : . :
rJMCP004H04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP017G12+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGGGTTGAACGAGAAGGGTGGGTC
rJMCP017G07+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGGGTTGAACGAGAAGGGTGGGTC
rJMCP007F04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP017E11+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP002A01+ TTTTGTTGaacaTatcgactattacGCGGCGATTGAGGAGTTGAtgcAGAAGGGTGGGTC
rJMCP004G03+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP004B05+ AAGGcacGGTC
rJMCP004A03+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
JMCP007G04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
                      ____________________________________________________________
consensus TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
 
. : . : . : . : . : . :
rJMCP004H04+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017G12+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017G07+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP007F04+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017E11+ CACAAAATCGGACATTTCGGGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP002A01+ CACAAAATCGGACATTTCcAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP004G03+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP004B05+ CAgttttaCGctgtaaagctcGgAGATAGAGcgccgcgtgcGCcGtctcgacggGcctag
rJMCP004A03+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
JMCP007G04+ CACAAAAagGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
                      ____________________________________________________________
consensus CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
 
. : . : . : . : . : . :
rJMCP004H04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017G12+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017G07+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP007F04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017E11+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP002A01+ TCACGCCACtCTGgacACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGgaccTGTT
rJMCP004G03+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP004B05+ agtgcgCtgtgacgactgGgtgatggagctgttctacttcgAATCCGGGgtcgaccTGaa
rJMCP004A03+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
JMCP007G04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
                      ____________________________________________________________
consensus TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
 
. : . : . : . : . : . :
rJMCP004H04+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017G12+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017G07+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP007F04+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017E11+ GGTGAAGAACAACTACATGAGGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP002A01+ GGTGAAGAACAtgaACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP004G03+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP004B05+ ccacGAGAAgttgatgtacttGCCGGACCCAAATcCGCgGCgcgcgCGGGGggGCGGggc
rJMCP004A03+ GGTGGAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
JMCP007G04+ GGTGAAGAACAtCTACAAGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
                      ____________________________________________________________
consensus GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
 
. : . : . : . : . : . :
rJMCP004H04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017G12+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017G07+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP007F04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017E11+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP002A01+ TCCGCgcAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP004G03+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP004B05+ aCCGggcttcggcttAGCGCCagatCCGCCGGccatgGTCCCCCgcggcgCcgcaggagc
rJMCP004A03+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
JMCP007G04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
                      ____________________________________________________________
consensus TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
 
. : . : . : . : . : . :
rJMCP004H04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017G12+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017G07+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP007F04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017E11+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP002A01+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP004G03+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP004B05+ accgtccggcgggttcgCcCcacACCCcaagcgTCgccaccaaagGCggtacttGAAAGg
rJMCP004A03+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
JMCP007G04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
                      ____________________________________________________________
consensus TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
 
. : . : . : . : . : . :
rJMCP004H04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017G12+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017G07+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP007F04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017E11+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP002A01+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP004G03+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP004B05+ gaCCGCCGcgcGCGcgagaccggcctAACcacGAGGGCCCggcttGTCCTCCAgagggcC
rJMCP004A03+ CTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAGGGCCCCCGAAGTCCTCCACTCCCGC
JMCP007G04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
                      ____________________________________________________________
consensus TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
 
. : . : . : . : . : . :
rJMCP004H04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017G12+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017G07+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP007F04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017E11+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP002A01+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP004G03+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP004B05+ gGCCGCTCCCCC
rJMCP004A03+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
JMCP007G04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
                      ____________________________________________________________
consensus CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA