Contig 001513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002D07Sequence566001513 (10)ref|XP_009763164.1|101PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMCP003B08Sequence517001513 (10)ref|XP_009763164.1|101PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMCP012D04Sequence246001513 (10)
JMCP018D09Sequence587001513 (10)ref|XP_009763164.1|99.8PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMFF045L03Sequence507001513 (10)ref|XP_008345060.1|101PREDICTED: uncharacterized protein LOC103407964 [Malus domestica] ref|XP_0093452486001513 (10)ref|XP_009763164.1|101PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMSF019C12Sequence514001513 (10)ref|XP_009763164.1|101PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMSF020C12Sequence513001513 (10)ref|XP_009763164.1|101PREDICTED: uncharacterized protein LOC104215116 [Nicotiana sylvestris]
JMSF048L13Sequence558001513 (10)ref|XP_008345060.1|100PREDICTED: uncharacterized protein LOC103407964 [Malus domestica] ref|XP_0093452507001513 (10)ref|XP_008345060.1|100PREDICTED: uncharacterized protein LOC103407964 [Malus domestica] ref|XP_0093452

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048L13+ TTTTACTAGAACTCTGAACTCTTATTTCA
JMCP018D09+ GTAAAACAAATGACAACATTTTACTAGAACTCTGAACTCTTATTTCA
JMFF045L03+ ACTAGAACTCTGAACTCTTATTTCA
JMCP012D04+ GAACTCTTATTTCA
rJMFF045L03- ACTAGAACTCTGAACTCTTATTTCA
JMCP002D07+ ACTAGAACTCTGAACTCTTATTTCA
                      ____________________________________________________________
consensus GTAAAACAAATGACAACATTTTACTAGAACTCTGAACTCTTATTTCA
 
. : . : . : . : . : . :
JMSF048L13+ GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
rJMSF048L13- AACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
JMCP018D09+ GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
rJMCP003B08+ AAGGAAATGCAGAATCTTGATTTATTTACAACAAA
JMFF045L03+ GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
rJMSF020C12- TATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
rJMSF019C12- TATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
JMCP012D04+ GAATCATATTgTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
rJMFF045L03- GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
JMCP002D07+ GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
                      ____________________________________________________________
consensus GAATCATATTCTCAGGTAAACATGGAAGGAAATGCAGAATCTTGATTTATTTACAACAAA
 
. : . : . : . : . : . :
JMSF048L13+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
rJMSF048L13- ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
JMCP018D09+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
rJMCP003B08+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACCAGAATCTGATGACATT
JMFF045L03+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
rJMSF020C12- ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
rJMSF019C12- ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
JMCP012D04+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
rJMFF045L03- ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
JMCP002D07+ ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
                      ____________________________________________________________
consensus ACATTAAACTTGAGTCTAAAAGCAAAAACATTATTTTAACAACTAGAATCTGATGACATT
 
. : . : . : . : . : . :
JMSF048L13+ TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
rJMSF048L13- TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
JMCP018D09+ TCAGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
rJMCP003B08+ TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
JMFF045L03+ TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
rJMSF020C12- TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
rJMSF019C12- TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
JMCP012D04+ TCTGTTCCTCCTGCCAAGACCACAGTTTgaatTTCCTAtgaATGACAGTGATATTATGTA
rJMFF045L03- TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
JMCP002D07+ TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
                      ____________________________________________________________
consensus TCTGTTCCTCCTGCCAAGACCACAGTTTCTTATTCCTAACTATGACAGTGATATTATGTA
 
. : . : . : . : . : . :
JMSF048L13+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGCTCTGTTTCTCCTGTTCAAACTTATCAATG
rJMSF048L13- TTTGATGCCAAACTTGCTTTAGTGTCTTTGCTCTGTTTCTCCTGTTCAAACTTATCAATG
JMCP018D09+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTTAAACTTATCAATG
rJMCP003B08+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
JMFF045L03+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
rJMSF020C12- TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
rJMSF019C12- TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
JMCP012D04+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACT
rJMFF045L03- TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
JMCP002D07+ TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
                      ____________________________________________________________
consensus TTTGATGCCAAACTTGCTTTAGTGTCTTTGTTCTGTTTCTCCTGTTCAAACTTATCAATG
 
. : . : . : . : . : . :
JMSF048L13+ GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
rJMSF048L13- GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
JMCP018D09+ GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
rJMCP003B08+ GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
JMFF045L03+ GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
rJMSF020C12- GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
rJMSF019C12- GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
rJMFF045L03- GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
JMCP002D07+ GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
                      ____________________________________________________________
consensus GCAATCTGAAGTTCATCTGTGCCTCCGACAGCTCTCATGGTGTAGAAATACACCCCAAAG
 
. : . : . : . : . : . :
JMSF048L13+ ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
rJMSF048L13- ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
JMCP018D09+ ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
rJMCP003B08+ ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
JMFF045L03+ ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
rJMSF020C12- ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
rJMSF019C12- ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
rJMFF045L03- ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
JMCP002D07+ ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
                      ____________________________________________________________
consensus ACAAATCCTGACAAGCCTCCAGCAACTACAAGATTCTTGGTTTTGGGTGCAAGGCGATTG
 
. : . : . : . : . : . :
JMSF048L13+ AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
rJMSF048L13- AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
JMCP018D09+ AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
rJMCP003B08+ AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
JMFF045L03+ AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
rJMSF020C12- AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
rJMSF019C12- AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
rJMFF045L03- AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
JMCP002D07+ AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
                      ____________________________________________________________
consensus AATGCTGTAAAAACAACCATCTTACAAGAATCACTATTGTGCTTCTGACCAGTTTCCGGC
 
. : . : . : . : . : . :
JMSF048L13+ GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
rJMSF048L13- GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
JMCP018D09+ GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
rJMCP003B08+ GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
JMFF045L03+ GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
rJMSF020C12- GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
rJMSF019C12- GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
rJMFF045L03- GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAA
JMCP002D07+ GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
                      ____________________________________________________________
consensus GTCCAACCTCGCGGCGTCGGCGGGTCGCTGCGATTTGCGAAGAGTTGAAGAATGAGATGC
 
. : . : . : . : . : . :
JMSF048L13+ GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGC
rJMSF048L13- GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGC
JMCP018D09+ GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGCAATTACTCCGTATAA
rJMCP003B08+ GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGCAATTACTCCGTATAA
JMFF045L03+ GT
rJMSF020C12- GTAGGAACAATAGGGTACTAGGGTTT
rJMSF019C12- GTAGGAACAATAGGGTACTAGGGTTT
JMCP002D07+ GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGCAATTACTCCGTATAAGAT
                      ____________________________________________________________
consensus GTAGGAACAATAGGGTACTAGGGTTTACCCGTTTAGTCTAGCAATTACTCCGTATAAGAT