Contig 001494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015A14Sequence441006544 (3)ref|XP_009592048.1|3e-19PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi773001494 (3)ref|XP_011080768.1|137PREDICTED: putative tRNA pseudouridine synthase [Sesamum indicum]
JMSF025L02Sequence657006544 (3)ref|XP_009592048.1|1e-79PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi751001494 (3)ref|XP_006348028.1|2e-80PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero
JMSF050A15Sequence657006544 (3)ref|XP_009592048.1|1e-83PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi704001494 (3)ref|XP_006348028.1|2e-37PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015A14+ TGCCAATCCGTGCA
                      ____________________________________________________________
consensus TGCCAATCCGTGCA
 
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rJMSF015A14+ AGATGGCTATATGAAACTGACGCCAGGGATAAACTCAGTTCTTCTCATTTCCGAAAGATA
rJMSF025L02+ GAAAGATA
                      ____________________________________________________________
consensus AGATGGCTATATGAAACTGACGCCAGGGATAAACTCAGTTCTTCTCATTTCCGAAAGATA
 
. : . : . : . : . : . :
rJMSF015A14+ TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
rJMSF025L02+ TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
                      ____________________________________________________________
consensus TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
 
. : . : . : . : . : . :
rJMSF015A14+ GTCTGTGGAGAATCATTCATGTTACATCAAANTTNCTNNNNNGGTAGGAACAGCGATTGC
rJMSF025L02+ GTCTGTGGAGAATCATTCATGTTACATCAAATACGC-AAAATGGTAGGAACAGCGATTGC
                      ____________________________________________________________
consensus GTCTGTGGAGAATCATTCATGTTACATCAAATTTGCTAAAATGGTAGGAACAGCGATTGC
 
. : . : . : . : . : . :
rJMSF015A14+ AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
rJMSF025L02+ AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
                      ____________________________________________________________
consensus AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
 
. : . : . : . : . : . :
rJMSF015A14+ GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
rJMSF025L02+ GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
rJMSF050A15+ TGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
                      ____________________________________________________________
consensus GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
 
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rJMSF015A14+ AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
rJMSF025L02+ AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
rJMSF050A15+ AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
                      ____________________________________________________________
consensus AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
 
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rJMSF015A14+ CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
rJMSF025L02+ CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
rJMSF050A15+ CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
                      ____________________________________________________________
consensus CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
 
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rJMSF015A14+ TTTGGATCCTTTA--GTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
rJMSF025L02+ TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
rJMSF050A15+ TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
                      ____________________________________________________________
consensus TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
 
. : . : . : . : . : . :
rJMSF015A14+ TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
rJMSF025L02+ TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
rJMSF050A15+ TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
                      ____________________________________________________________
consensus TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
 
. : . : . : . : . : . :
rJMSF015A14+ GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
rJMSF025L02+ GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
rJMSF050A15+ GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
                      ____________________________________________________________
consensus GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
 
. : . : . : . : . : . :
rJMSF015A14+ CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
rJMSF025L02+ CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
rJMSF050A15+ CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
                      ____________________________________________________________
consensus CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
 
. : . : . : . : . : . :
rJMSF015A14+ CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
rJMSF025L02+ CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
rJMSF050A15+ CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
                      ____________________________________________________________
consensus CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
 
. : . : . : . : . : . :
rJMSF015A14+ TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAA
rJMSF025L02+ TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGACCATGATT
rJMSF050A15+ TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGA-CATGATT
                      ____________________________________________________________
consensus TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGACCATGATT
 
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rJMSF025L02+ TTGTATTATATACGTATGTAGTAT
rJMSF050A15+ TTGTATTATATACGTATGTAGTATCGTCCCATCCCGGCCATAATGCTTGCCAGATTATTA
                      ____________________________________________________________
consensus TTGTATTATATACGTATGTAGTATCGTCCCATCCCGGCCATAATGCTTGCCAGATTATTA
 
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rJMSF050A15+ CACAACACGTACATACAGACAACAACTCAACAAGCAATCTATTCCTCATCATTTCTTAGG
                      ____________________________________________________________
consensus CACAACACGTACATACAGACAACAACTCAACAAGCAATCTATTCCTCATCATTTCTTAGG
 
. : . : . : . : . : . :
rJMSF050A15+ CCTAGGAACTAGGAATTTATGGTTTGACAATGATGTTTGAAATTCTTGAGGGCATGAATA
                      ____________________________________________________________
consensus CCTAGGAACTAGGAATTTATGGTTTGACAATGATGTTTGAAATTCTTGAGGGCATGAATA