| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025N18 | Sequence | 616 | 006710 (3) | ref|XP_009802816.1| | 9e-67 | PREDICTED: protein AAR2 homolog isoform X1 [Nicotiana sylvestris] | 670 | 001492 (3) | emb|CDP02717.1| | 1e-46 | unnamed protein product [Coffea canephora] |
| JMSF046G07 | Sequence | 767 | 006710 (3) | ref|XP_009629239.1| | 1e-116 | PREDICTED: protein AAR2 homolog [Nicotiana tomentosiformis] | 805 | 001492 (3) | ref|XP_009629239.1| | 3e-89 | PREDICTED: protein AAR2 homolog [Nicotiana tomentosiformis] |
| JMSF049N22 | Sequence | 611 | 006710 (3) | ref|XP_009802816.1| | 8e-92 | PREDICTED: protein AAR2 homolog isoform X1 [Nicotiana sylvestris] | 691 | 001492 (3) | emb|CDP02717.1| | 9e-47 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF046G07+ CACGACCTTAC
____________________________________________________________
consensus CACGACCTTAC
. : . : . : . : . : . :
rJMSF046G07+ AAACATGAACCTTGACAAGACACAGGTATTGGAGACCATTATAGCAAAGGAATATGGCGG
____________________________________________________________
consensus AAACATGAACCTTGACAAGACACAGGTATTGGAGACCATTATAGCAAAGGAATATGGCGG
. : . : . : . : . : . :
rJMSF046G07+ AAATGAAAATTCCCTTCTGGGAGAATTGCCATTTTCCTTTATTGCATTTCTGATGGGACA
____________________________________________________________
consensus AAATGAAAATTCCCTTCTGGGAGAATTGCCATTTTCCTTTATTGCATTTCTGATGGGACA
. : . : . : . : . : . :
rJMSF046G07+ GTCACTTGAAGCATATTTACAGTGGAAGCTTATTGCCAGCCTTTTTCTTGGATGTACAGA
____________________________________________________________
consensus GTCACTTGAAGCATATTTACAGTGGAAGCTTATTGCCAGCCTTTTTCTTGGATGTACAGA
. : . : . : . : . : . :
rJMSF046G07+ GGCTCCTCTTCACACAAGGAGTCAGCTATTCACCAAGTTTGTCCAAGTAATATATTATCA
rJMSF025N18+ TTTGTCCAAGTAATATATTATCA
rJMSF049N22+ TTGTCCAAGTAATATATTATCA
____________________________________________________________
consensus GGCTCCTCTTCACACAAGGAGTCAGCTATTCACCAAGTTTGTCCAAGTAATATATTATCA
. : . : . : . : . : . :
rJMSF046G07+ GTTGAAATTTGGATTTCAAAAGGACGATAAAAATGCCGATGTTGCAGAGAAAGGAGCCAT
rJMSF025N18+ GTTGAAATTTGGATTTCAAAAGGACGATAAAAATGCCGATGTTGCAGAGAAAGGAGCCAT
rJMSF049N22+ GTTGAAATTTGGATTTCAAAAGGACGATAAAAATGCCGATGTTGCAGAGAAAGGAGCCAT
____________________________________________________________
consensus GTTGAAATTTGGATTTCAAAAGGACGATAAAAATGCCGATGTTGCAGAGAAAGGAGCCAT
. : . : . : . : . : . :
rJMSF046G07+ GGCATTGTTGGATGAGTCTTGGTTATCTGATGACAGTTTCCTGCACATCCTTTGCAAGGA
rJMSF025N18+ GGCATTGTTGGATGAGTCTTGGTTATCTGATGACAGTTTCCTGCACATCCTTTGCAAGGA
rJMSF049N22+ GGCATTGTTGGATGAGTCTTGGTTATCTGATGACAGTTTCCTGCACATCCTTTGCAAGGA
____________________________________________________________
consensus GGCATTGTTGGATGAGTCTTGGTTATCTGATGACAGTTTCCTGCACATCCTTTGCAAGGA
. : . : . : . : . : . :
rJMSF046G07+ CTTCTTCTCACTGCTACTTGAGGCCCCTGTGATTGATGGTGACCTCCTATCATGGACTAG
rJMSF025N18+ CTTCTTCTCACTGCTACTTGAGGCCCCTGTGATTGATGGTGACCTCCTATCATGGACTAG
rJMSF049N22+ CTTCTTCTCACTGCTACTTGAGGCCCCTGTGATTGATGGTGACCTCCTATCATGGACTAG
____________________________________________________________
consensus CTTCTTCTCACTGCTACTTGAGGCCCCTGTGATTGATGGTGACCTCCTATCATGGACTAG
. : . : . : . : . : . :
rJMSF046G07+ AAAACTCAAAGATCTGCTCGAGGACTCTCTTGGTTGGGACTTTGAATCGAACAATGCAGC
rJMSF025N18+ AAAACTCAAAGATCTGCTCGAGGACTCTCTTGGTTGGGACTTTGAATCGAACAATGCAGC
rJMSF049N22+ AAAACTCAAAGATCTGCTCGAGGACTCTCTTGGTTGGGACTTTGAATCGAACAATGCAGC
____________________________________________________________
consensus AAAACTCAAAGATCTGCTCGAGGACTCTCTTGGTTGGGACTTTGAATCGAACAATGCAGC
. : . : . : . : . : . :
rJMSF046G07+ TGACGAATTAAATTTTGAAGATGATGAGTATGCTCCAGTGGTAGAGATGATAGATGAACC
rJMSF025N18+ TGACGAATTAAATTTTGAAGATGATGAGTATGCTCCAGTGGTAGAGATGATAGATGAACC
rJMSF049N22+ TGACGAATTAAATTTTGAAGATGATGAGTATGCTCCAGTGGTAGAGATGATAGATGAACC
____________________________________________________________
consensus TGACGAATTAAATTTTGAAGATGATGAGTATGCTCCAGTGGTAGAGATGATAGATGAACC
. : . : . : . : . : . :
rJMSF046G07+ AGGCCATAGCGGCATGGACACATCTTCAATCTAAACCCTAGCCAGAGGCAGACAATTATA
rJMSF025N18+ AGGCCATAGCGGCATGGACACATCTTCAATCTAAACCCTAGCCAGAGGCAGACAATTATA
rJMSF049N22+ AGGCCATAGCGGCATGGACACATCTTCAATCTAAACCCTAGCCAGAGGCAGACAATTATA
____________________________________________________________
consensus AGGCCATAGCGGCATGGACACATCTTCAATCTAAACCCTAGCCAGAGGCAGACAATTATA
. : . : . : . : . : . :
rJMSF046G07+ CCGAGGGCAAACTCATTTTGCGGACCAACTAACGTCAGTGTGCTTTGTATATTACTGCAA
rJMSF025N18+ CCGAGGGCAAACTCATTTTGCGGACCAACTAACGTCAGTGTGCTTTGTATATTACTGCAA
rJMSF049N22+ CCGAGGGCAAACTCATTTTGCGGACCAACTAACGTCAGTGTGCTTTGTATATTACTGCAA
____________________________________________________________
consensus CCGAGGGCAAACTCATTTTGCGGACCAACTAACGTCAGTGTGCTTTGTATATTACTGCAA
. : . : . : . : . : . :
rJMSF046G07+ ATAGTTGAAGGTATTACCATGATCAAATGGTGGAGTTTAATTTACAGGTCAGATATTGAT
rJMSF025N18+ ATAGTTGAAGGTATTACCATGATCAAATGGTGGAGTTTAATTTACAGGTCAGATATTGAT
rJMSF049N22+ ATAGTTGAAGGTATTACCATGATCAAATGGTGGAGTTTAATTTACAGGTCAGATATTGAT
____________________________________________________________
consensus ATAGTTGAAGGTATTACCATGATCAAATGGTGGAGTTTAATTTACAGGTCAGATATTGAT
. : . : . : . : . : . :
rJMSF046G07+ AGAATTTTCTCACTGTAATATAATGTTGCCTAATCTACAGGAAAGCAACCTTTATGTGGC
rJMSF025N18+ AGAATTTTCTCACTGTAATATAATGTTGCCTAATCTACAGGAAAGCAACCTTTATGTGGC
rJMSF049N22+ AGAATTTTCTCACTGTAATATAATGTTGCCTAATCTACAGGAAAGCAACCTTTATGTGGC
____________________________________________________________
consensus AGAATTTTCTCACTGTAATATAATGTTGCCTAATCTACAGGAAAGCAACCTTTATGTGGC
. : . : . : . : . : . :
rJMSF046G07+ C
rJMSF025N18+ CTTGTTTTGGTTTTGCTTACTTTGTTTTTGTGGTCCACTTCAATCCATACTTGTTAC
rJMSF049N22+ CTTGTTTTGGTTTTGCTTACTTTGTTTTTGTGGTCCACTTCAATCCATACTTGTTACATG
____________________________________________________________
consensus CTTGTTTTGGTTTTGCTTACTTTGTTTTTGTGGTCCACTTCAATCCATACTTGTTACATG
. : . : . : . : . : . :
rJMSF049N22+ TCACTGAATTGAAGCTTTGATAGTTTGATTCTTATTTTTAGATTCTCAAATTCCTTGAGT
____________________________________________________________
consensus TCACTGAATTGAAGCTTTGATAGTTTGATTCTTATTTTTAGATTCTCAAATTCCTTGAGT