Contig 001485:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN041K04Sequence524001485 (4)ref|XP_009786288.1|50.8PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]
JMFN041K06Sequence529001485 (4)ref|XP_009786288.1|50.8PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]
JMSF049B14Sequence588001485 (4)ref|XP_009786288.1|50.8PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]540001485 (4)ref|XP_009786288.1|50.8PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN041K06+                                                                AATTTCC
JMSF049B14+                       TTTTTTTTTTGTTTTTTTGAATAGAAAAGGACAAATATTTTAATTTCC
                      ____________________________________________________________
consensus                         TTTTTTTTTTGTTTTTTTGAATAGAAAAGGACAAATATTTTAATTTCC
 
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JMFN041K06+           ATACATTTCAGCCTTGTAAGTCCACAAAATTTTAAAAAAACAACACTCAAACAAATTCTA
JMFN041K04+                              GTCCACAAAATTTTAAAAAAACAACACTCAAACAAATTCTA
JMSF049B14+           ATACATTTCAGCCTTGTAAGTCCACAAAATTTTAAAAAAACAACACTCAAACAAATTCTA
rJMSF049B14-                             GTCCACAAAATTTTAAAAAAACAACACTCAAACAAATTCTA
                      ____________________________________________________________
consensus             ATACATTTCAGCCTTGTAAGTCCACAAAATTTTAAAAAAACAACACTCAAACAAATTCTA
 
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JMFN041K06+           CACAACATCCTACCAAGACAAGACTACACATATACTTCCCAGACAAATTTCGCCTGACGT
JMFN041K04+           CACAACATCCTACCAAGACAAGACTACACATATACTTCCCAGACAAATTTCGCCTGACGT
JMSF049B14+           CACAACATCCTACCAAGACAAGACTACACATATACTTCCCAGACAAATTTCGCCTGACGT
rJMSF049B14-          CACAACATCCTACCAAGACAAGACTACACATATACTTCCCAGACAAATTTCGCCTGACGT
                      ____________________________________________________________
consensus             CACAACATCCTACCAAGACAAGACTACACATATACTTCCCAGACAAATTTCGCCTGACGT
 
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JMFN041K06+           ATATGACACATTAAGCGAAATTTCTTTCAGACGAGAGAGTATCTCGAGGAATTTCTAATG
JMFN041K04+           ATATGACACATTAAGCGAAATTTCTTTCAGACGAGAGAGTATCTCGAGGAATTTCTAATG
JMSF049B14+           ATATGACACATTAAGCGAAATTTCTTTCAGACGAGAGAGTATCTCGAGGAATTTCTAATG
rJMSF049B14-          ATATGACACATTAAGCGAAATTTCTTTCAGACGAGAGAGTATCTCGAGGAATTTCTAATG
                      ____________________________________________________________
consensus             ATATGACACATTAAGCGAAATTTCTTTCAGACGAGAGAGTATCTCGAGGAATTTCTAATG
 
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JMFN041K06+           ACGATCGAGTGTATGTATAGGCGGTACATACAGGACTAGCGGGCGGCACCGGAGATGGTG
JMFN041K04+           ACGATCGAGTGTATGTATAGGCGGTACATACAGGACTAGCGGGCGGCACCGGAGATGGTG
JMSF049B14+           ACGATCGAGTGTATGTATAGGCGGTACATACAGGACTAGCGGGCGGCACCGGAGATGGTG
rJMSF049B14-          ACGATCGAGTGTATGTATAGGCGGTACATACAGGACTAGCGGGCGGCACCGGAGATGGTG
                      ____________________________________________________________
consensus             ACGATCGAGTGTATGTATAGGCGGTACATACAGGACTAGCGGGCGGCACCGGAGATGGTG
 
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JMFN041K06+           GGTTGGTGGGGGGAGGTGGGGGCACAAGCAATGCAAGCAAGCAAGAGGATGGCAGAAGAA
JMFN041K04+           GGTTGGTGGGGGGAGGTGGGGGCACAAGCAATGCAAGCAAGCAAGAGGATGGCAGAAGAA
JMSF049B14+           GGTTGGTGGGGGGAGGTGGGGGCACAAGCAATGCAAGCAAGCAAGAGGATGGCAGAAGAA
rJMSF049B14-          GGTTGGTGGGGGGAGGTGGGGGCACAAGCAATGCAAGCAAGCAAGAGGATGGCAGAAGAA
                      ____________________________________________________________
consensus             GGTTGGTGGGGGGAGGTGGGGGCACAAGCAATGCAAGCAAGCAAGAGGATGGCAGAAGAA
 
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JMFN041K06+           GCACCATCTTCTTGGAGATCAGAGAAGCTCCTCTTGAACTTGTGGCCTCTCCCTTTGTTC
JMFN041K04+           GCACCATCTTCTTGGAGATCAGAGAAGCTCCTCTTGAACTTGTGGCCTCTCCCTTTGTTC
JMSF049B14+           GCACCATCTTCTTGGAGATCAGAGAAGCTCCTCTTGAACTTGTGGCCTCTCCCTTTGTTC
rJMSF049B14-          GCACCATCTTCTTGGAGATCAGAGAAGCTCCTCTTGAACTTGTGGCCTCTCCCTTTGTTC
                      ____________________________________________________________
consensus             GCACCATCTTCTTGGAGATCAGAGAAGCTCCTCTTGAACTTGTGGCCTCTCCCTTTGTTC
 
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JMFN041K06+           AATATTATGCCTTGTACCTTGTTGTGTACTTGAGTAGTGTTCACTCCTTCTTGTTGCTGC
JMFN041K04+           AATATTATGCCTTGTACCTTGTTGTGTACTTGAGTAGTGTTCACTCCTTCTTGTTGCTGC
JMSF049B14+           AATATTATGCCTTGTACCTTGTTGTGTACTTGAGTAGTGTTCACTCCTTCTTGTTGCTGC
rJMSF049B14-          AATATTATGCCTTGTACCTTGTTGTGTACTTGAGTAGTGTTCACTCCTTCTTGTTGCTGC
                      ____________________________________________________________
consensus             AATATTATGCCTTGTACCTTGTTGTGTACTTGAGTAGTGTTCACTCCTTCTTGTTGCTGC
 
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JMFN041K06+           CTTGTCTTGTTTGCCTCTTCCACCCTAGACACCATCTTTTTTGCTTCTATAATTTAATTT
JMFN041K04+           CTTGTCTTGTTTGCCTCTTCCACCCTAGACACCATCTTTTTTGCTTCTATAATTTAATTT
JMSF049B14+           CTTGTCTTGTTTGCTTCTTCCACCCTAGACACCATCTTTTTTGCTTCTATAATTTAATTT
rJMSF049B14-          CTTGTCTTGTTTGCTTCTTCCACCCTAGACACCATCTTTTTTGCTTCTATAATTTAATTT
                      ____________________________________________________________
consensus             CTTGTCTTGTTTGCTTCTTCCACCCTAGACACCATCTTTTTTGCTTCTATAATTTAATTT
 
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JMFN041K06+           CAGAGAGAGAGAGAGAGAGACAAAGAGAGAGAGAGAG                       
JMFN041K04+           CAGAGAGAGAGAGAGAGAGACAAAGAGAGAGAGAGAG                       
JMSF049B14+           CAGAGAGAGAGAGAGAGAGACAAAGAGAGAGAGAGAGAGATGAAGGTAAGTGTGTGCATC
rJMSF049B14-          CAGAGAGAGAGAGAGAGAGACAAAGAGAGAGAGAGAGAGATGAAGGTAAGTGTGTGCATC
                      ____________________________________________________________
consensus             CAGAGAGAGAGAGAGAGAGACAAAGAGAGAGAGAGAGAGATGAAGGTAAGTGTGTGCATC