| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021N09 | Sequence | 597 | 003869 (6) | gb|KJB11182.1| | 1e-62 | hypothetical protein B456_001G244000 [Gossypium raimondii] | 726 | 001477 (3) | ref|XP_011088542.1| | 3e-121 | PREDICTED: amidophosphoribosyltransferase, chloroplastic [Sesamum indicum] |
| JMSF017J18 | Sequence | 467 | 003869 (6) | ref|XP_009601258.1| | 7e-36 | PREDICTED: amidophosphoribosyltransferase, chloroplastic-like [Nicotiana toment | 751 | 001477 (3) | ref|XP_011088542.1| | 9e-131 | PREDICTED: amidophosphoribosyltransferase, chloroplastic [Sesamum indicum] |
| JMSF046F22 | Sequence | 744 | 003869 (6) | emb|CDO96977.1| | 2e-94 | unnamed protein product [Coffea canephora] | 825 | 001477 (3) | ref|XP_011088542.1| | 8e-138 | PREDICTED: amidophosphoribosyltransferase, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF017J18+ TTGAGTGTGATGTTGTG
rJMSF046F22+ GGGGAAATTCTTGCTACTGAAGCCCCTGTTGAGTGTGATGTTGTG
____________________________________________________________
consensus GGGGAAATTCTTGCTACTGAAGCCCCTGTTGAGTGTGATGTTGTG
. : . : . : . : . : . :
rJMSF017J18+ ATAGCTGTTCCTGATTCTGGGGTTGTGGCTGCACTTGGTTATGCTGCGAAAGCGGGGGTG
rJMFF021N09+ TGGGGTTGTGGCTGCACTTGGTTATGCTGCGAAAGCGGGGGTG
rJMSF046F22+ ATAGCTGTTCCTGATTCTGGGGTTGTGGCTGCACTTGGTTATGCTGCGAAAGCGGGGGTG
____________________________________________________________
consensus ATAGCTGTTCCTGATTCTGGGGTTGTGGCTGCACTTGGTTATGCTGCGAAAGCGGGGGTG
. : . : . : . : . : . :
rJMSF017J18+ CCCTTTCAGCAAGGGTTGATAAGGTCCCATTATGTGGGAAGGACTTTTATCGAGCCATCT
rJMFF021N09+ CCCTTTCAGCAAGGGTTGATAAGGTCCCATTATGTGGGAAGGACTTTTATCGAGCCATCT
rJMSF046F22+ CCCTTTCAGCAAGGGTTGATAAGGTCCCATTATGTGGGAAGGACTTTTATCGAGCCATCT
____________________________________________________________
consensus CCCTTTCAGCAAGGGTTGATAAGGTCCCATTATGTGGGAAGGACTTTTATCGAGCCATCT
. : . : . : . : . : . :
rJMSF017J18+ CAAAAGATTAGGGATTTCGGGGTTAAGCTCAAGCTCTCACCTGTAAGGGCTGTATTGGAA
rJMFF021N09+ CAAAAGATTAGGGATTTCGGGGTTAAGCTCAAGCTCTCACCTGTAAGGGCTGTATTGGAA
rJMSF046F22+ CAAAAGATTAGGGATTTCGGGGTTAAGCTCAAGCTCTCACCTGTAAGGGCTGTATTGGAA
____________________________________________________________
consensus CAAAAGATTAGGGATTTCGGGGTTAAGCTCAAGCTCTCACCTGTAAGGGCTGTATTGGAA
. : . : . : . : . : . :
rJMSF017J18+ GGGAAAAGGGTCGTGGTTGTGGACGATTCTATTGTAAGGGGAACTACTTCGTCCAAGATT
rJMFF021N09+ GGGAAAAGGGTCGTGGTTGTGGACGATTCTATTGTAAGGGGAACTACTTCGTCCAAGATT
rJMSF046F22+ GGGAAAAGGGTCGTGGTTGTGGACGATTCTATTGTAAGGGGAACTACTTCGTCCAAGATT
____________________________________________________________
consensus GGGAAAAGGGTCGTGGTTGTGGACGATTCTATTGTAAGGGGAACTACTTCGTCCAAGATT
. : . : . : . : . : . :
rJMSF017J18+ GTTAGGCTGCTAAAGGAGGCAGGAGCAAAGGAGGTGCATATGAGGATTGCCAGCCCTCCC
rJMFF021N09+ GTTAGGCTGCTAAAGGAGGCAGGAGCAAAGGAGGTGCATATGAGGATTGCCAGCCCTCCC
rJMSF046F22+ GTTAGGCTGCTAAAGGAGGCAGGAGCAAAGGAGGTGCATATGAGGATTGCCAGCCCTCCC
____________________________________________________________
consensus GTTAGGCTGCTAAAGGAGGCAGGAGCAAAGGAGGTGCATATGAGGATTGCCAGCCCTCCC
. : . : . : . : . : . :
rJMSF017J18+ ATTATAGCTTCTTGCTACTATGGAGTGGACACCCCCAGTGCAGAGGAGTTGATTTCCAAT
rJMFF021N09+ ATTATAGCTTCTTGCTACTATGGAGTGGACACCCCCAGTGCAGAGGAGTTGATTTCCAAT
rJMSF046F22+ ATTATAGCTTCTTGCTACTATGGAGTGGACACCCCCAGTGCAGAGGAGTTGATTTCCAAT
____________________________________________________________
consensus ATTATAGCTTCTTGCTACTATGGAGTGGACACCCCCAGTGCAGAGGAGTTGATTTCCAAT
. : . : . : . : . : . :
rJMSF017J18+ AGGATGACTGTGGAAGAAATTAGGGACTTCATCGGATCAGATTCACTCGCTTTTCTCCCC
rJMFF021N09+ AGGATGACTGTGGAAGGAATTAGGGACTTCATCGGATCAGATTCACTCGCTTTTCTCCCC
rJMSF046F22+ AGGATGACTGTGGAAGAAATTAGGGACTTCATCGGATCAGATTCACTCGCTTTTCTCCCC
____________________________________________________________
consensus AGGATGACTGTGGAAGAAATTAGGGACTTCATCGGATCAGATTCACTCGCTTTTCTCCCC
. : . : . : . : . : . :
rJMSF017J18+ ATTGATAGCCTGAAGAACTTATTAGGCAGCGAATCTCCAAATTTCTGCTATGCTTGCTTT
rJMFF021N09+ ATTGATAGCCTGAAGAACTTATTAGGCAGCGAATCTCCAAATTTCTGCTATGCTTGCTTT
rJMSF046F22+ ATTGATAGCCTGAAGAACTTATTAGGCAGCGAATCTCCAAATTTCTGCTATGCTTGCTTT
____________________________________________________________
consensus ATTGATAGCCTGAAGAACTTATTAGGCAGCGAATCTCCAAATTTCTGCTATGCTTGCTTT
. : . : . : . : . : . :
rJMSF017J18+ TCCGGGAAGTATCCAGTTCAGCCAAGGGGCAAGGTGAAAAGGGTGGGCGACTTCATGGAC
rJMFF021N09+ TCCGGGAAGTATCCAGTTCAGCCAAGGGGCAAGGTGAAAAGGGTGGGCGACTTCATGGAC
rJMSF046F22+ TCCGGGAAGTATCCAGTTCAGCCAAGGGGCAAGGTGAAAAGGGTGGGCGACTTCATGGAC
____________________________________________________________
consensus TCCGGGAAGTATCCAGTTCAGCCAAGGGGCAAGGTGAAAAGGGTGGGCGACTTCATGGAC
. : . : . : . : . : . :
rJMSF017J18+ GATGGATTGAGTGGTAACATGGGTTCCATTGATGGAGGATGGCTACAAGGAACTAGAATT
rJMFF021N09+ GATGGATTGAGTGGTAACATGGGTTCCATTGATGGAGGATGGCTACAAGGAACTAGAATT
rJMSF046F22+ GATGGATTGAGTGGTAACATGGGTTCCATTGATGGAGGATGGCTACAAGGAACTAGAATT
____________________________________________________________
consensus GATGGATTGAGTGGTAACATGGGTTCCATTGATGGAGGATGGCTACAAGGAACTAGAATT
. : . : . : . : . : . :
rJMSF017J18+ CTGAATGAGAAGGAAGATGAAAAAGTAGTCACAGTTGAGTCTTAGTTGTTGTCTTTGTAT
rJMFF021N09+ CTGAATGAGAAGGAAGATGAAAAAGTAGTCACAGTTGAGTCTTAGTTGTTGTCTTTGTAT
rJMSF046F22+ CTGAATGAGAAGGAAGATGAAAAAGTAGTCACAGTTGAGTCTTAGTTGTTGTCTTTGTAT
____________________________________________________________
consensus CTGAATGAGAAGGAAGATGAAAAAGTAGTCACAGTTGAGTCTTAGTTGTTGTCTTTGTAT
. : . : . : . : . : . :
rJMSF017J18+ TTGAGTTAGCATTCCATTCTGCTAAATTTACTGAATTTAGAAGGTTAGAAGATAAGAT
rJMFF021N09+ TTGAGTTAGCATTCCATTCTGCTAAATTTACTGAATTTAGAAGGTTAGAAGATAAGATCT
rJMSF046F22+ TTGAGTTAGCATTCCATTCTGCTAAATTTACTGAATTTAGAAGGTTAGAAGATAAGATCT
____________________________________________________________
consensus TTGAGTTAGCATTCCATTCTGCTAAATTTACTGAATTTAGAAGGTTAGAAGATAAGATCT
. : . : . : . : . : . :
rJMFF021N09+ AAACTGCAGATTGGATACAATTT
rJMSF046F22+ AAACTGCAGATTGGATACAATTTTGGATATTACATTCCATTTTCAGTGTGTTTTGAATGT
____________________________________________________________
consensus AAACTGCAGATTGGATACAATTTTGGATATTACATTCCATTTTCAGTGTGTTTTGAATGT