Contig 001473:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002P20Sequence239006648 (5)735001473 (4)ref|XP_009617458.1|2e-92PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF015B03Sequence250006648 (5)782001473 (4)ref|XP_009617457.1|1e-106PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF039M22Sequence642006648 (5)ref|XP_006350560.1|5e-46PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic-like [So807001473 (4)ref|XP_009617458.1|3e-99PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF045H14Sequence764006648 (5)ref|XP_006350560.1|3e-76PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic-like [So707001473 (4)ref|XP_009617458.1|3e-85PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform

Alignment

This contig is upended


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rJMSF015B03+                                                            GAGTCNTGGT
rJMSF039M22+                                           ATCGAGTTGATTAGATGGAGTCTTGGT
                      ____________________________________________________________
consensus                                              ATCGAGTTGATTAGATGGAGTCTTGGT
 
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rJMSF015B03+          TCAACTGCTGTTCGGATCACAGAGGAATACA-TTTATGCTCACCAGCAGCGAAATAGGCT
rJMSF002P20+                                               GCTCACCAGCAGCGAAATAGGCT
rJMSF039M22+          TCAACTGCTGTTCGAATCACAGAGGAATACATTTTATGCTCACCAGCAGCGAAATAGGCT
                      ____________________________________________________________
consensus             TCAACTGCTGTTCGGATCACAGAGGAATACATTTTATGCTCACCAGCAGCGAAATAGGCT
 
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rJMSF015B03+          CGCACATTTTATNGAACTCATGGAGATCTTAAATCCTCATTCTAAACCTAAGCATTGGCT
rJMSF002P20+          CGCACA-TTTATTGAACTCATGGAGATCTTAAATCCTCATTCTAAACCTAAGCATTGGCT
rJMSF039M22+          CGCACATTTTATTGAACTCATGGAGATCTTAAATCCTCATTCTAAACCTAAGCATTGGCT
rJMSF045H14+                                                            AGCATTGGCT
                      ____________________________________________________________
consensus             CGCACATTTTATTGAACTCATGGAGATCTTAAATCCTCATTCTAAACCTAAGCATTGGCT
 
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rJMSF015B03+          GGAAAAGCTTCCTGGGAAATGGCGTCTCTTATACTGCACAGGCAAACACATAGGGCTAAC
rJMSF002P20+          GGAAAAGCTTCCTGGGAAATGGCGTCTCTTATACTGCACAGGCAAACACATAGGGCTAAC
rJMSF039M22+          GGAAAAGCTTCCTGGGAAATGGCGTCTCTTATACTGCACAGGCAAACACATAGGGCTAAC
rJMSF045H14+          GGAAAAGCTTCCTGGGAAATGGCGTCTCTTATACTGCACAGGCAAACACATAGGGCTAAC
                      ____________________________________________________________
consensus             GGAAAAGCTTCCTGGGAAATGGCGTCTCTTATACTGCACAGGCAAACACATAGGGCTAAC
 
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rJMSF015B03+          TCTCCGGCAGCCTTCATTTCGCGTGCTTATTGGTGACGGGCACCTTACCATATCCAAATC
rJMSF002P20+          TCTCCGGCAGCCTTCATTTCGCGTGCTTATTGGTGACGGGCACCTTACCATATCCAAATC
rJMSF039M22+          TCTCCGGCAGCCTTCATTTCGCGTGCTTATTGGTGACGGGCACCTTACCATATCCAAATC
rJMSF045H14+          TCTCCGGCAGCCTTCATTTCGCGTGCTTATTGGTGACGGGCACCTTACCATATCCAAATC
                      ____________________________________________________________
consensus             TCTCCGGCAGCCTTCATTTCGCGTGCTTATTGGTGACGGGCACCTTACCATATCCAAATC
 
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rJMSF015B03+          ATCAAAACCCAAAACAACATTTTCAGTCTCCTCCCACATCGGTTTCAGAGTTGTGATTGG
rJMSF002P20+          ATCAAAACCCAAAACAACATTTTCAGTCTCCTCCCACATCGGTTTCAGAGTTGTGATTGG
rJMSF039M22+          ATCAAAACCCAAAACAACATTTTCAGTCTCCTCCCACATCGGTTTCAGAGTTGTGATTGG
rJMSF045H14+          ATCAAAACCCAAAACAACATTTTCAGTCTCCTCCCACATCGGTTTCAGAGTTGTGATTGG
                      ____________________________________________________________
consensus             ATCAAAACCCAAAACAACATTTTCAGTCTCCTCCCACATCGGTTTCAGAGTTGTGATTGG
 
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rJMSF015B03+          AAAGGACTGGCCTCACGACAAGTCTGGCGTCAATGGGGCATTGCAAACAGGCACTTCTTT
rJMSF002P20+          AAAGGACTGGCCTCACGACAAGTCTGGCGTCAATGGGGCATTGCAAACAGGCACTTCTTT
rJMSF039M22+          AAAGGACTGGCCTCACGACAAGTCTGGCGTCAATGGGGCATTGCAAACAGGCACTTCTTT
rJMSF045H14+          AAAGGACTGGCCTCACGACAAGTCTGGCGTCAATGGGGCATTGCAAACAGGCACTTCTTT
                      ____________________________________________________________
consensus             AAAGGACTGGCCTCACGACAAGTCTGGCGTCAATGGGGCATTGCAAACAGGCACTTCTTT
 
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rJMSF015B03+          CACACTGAGAGCCGGTAGGCGGCTGTATCTTACAGAGGAAACTACCACAACGAAGCTACC
rJMSF002P20+          CACACTGAGAGCCGGTAGGCGGCTGTATCTTACAGAGGAAACTACCACAACGAAGCTACC
rJMSF039M22+          CACACTGAGAGCCGGTAGGCGGCTGTATCTTACAGAGGAAACTACCACAACGAAGCTACC
rJMSF045H14+          CACACTGAGAGCCGGTAGGCGGCTGTATCTTACAGAGGAAACTACCACAACGAAGCTACC
                      ____________________________________________________________
consensus             CACACTGAGAGCCGGTAGGCGGCTGTATCTTACAGAGGAAACTACCACAACGAAGCTACC
 
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rJMSF015B03+          CTCATCATCAACACAGGATTCTCAGGCTGCTTCTGTACAGAAACGGCTATCCAGTAACCA
rJMSF002P20+          CTCATCATCAACACAGGATTCTCAGGCTGCTTCTGTACAGAAACGGCTATCCAGTAACCA
rJMSF039M22+          CTCATCATCAACACAGGATTCTCAGGCTGCTTCTGTACAGAAACGGCTATCCAGTAACCA
rJMSF045H14+          CTCATCATCAACACAGGATTCTCAGGCTGCTTCTGTACAGAAACGGCTATCCAGTAACCA
                      ____________________________________________________________
consensus             CTCATCATCAACACAGGATTCTCAGGCTGCTTCTGTACAGAAACGGCTATCCAGTAACCA
 
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rJMSF015B03+          GTGGAGAAAAGTCGTTCCTATAAAGGAATTCCCTTCGAGCCTCCCCGTAACCAAACTGAT
rJMSF002P20+          GTGGAGAAAAGTCGTTCCTATAAAGGAATTCCCTTCGAGCCTCCCCGTAACCAAACTGAT
rJMSF039M22+          GTGGAGAAAAGTCGTTCCTATAAAGGAATTCCCTTCGAGCCTCCCCGTAACCAAACTGAT
rJMSF045H14+          GTGGAGAAAAGTCGTTCCTATAAAGGAATTCCCTTCGAGCCTCCCCGTAACCAAACTGAT
                      ____________________________________________________________
consensus             GTGGAGAAAAGTCGTTCCTATAAAGGAATTCCCTTCGAGCCTCCCCGTAACCAAACTGAT
 
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rJMSF015B03+          ATCAGGCGATATTGAGGTGACAATGTCTCTGGACGAGCCGCTAGTCCGGAATGTAGAAAT
rJMSF002P20+          ATCAGGCGATATTGAGGTGACAATGTCTCTGGACGAGCCGCTAGTCCGGAATGTAGAAAT
rJMSF039M22+          ATCAGGCGATATTGAGGTGACAATGTCTCTGGACGAGCCGCTAGTCCGGAATGTAGAAAT
rJMSF045H14+          ATCAGGCGATATTGAGGTGACAATGTCTCTGGACGAGCCGCTAGTCCGGAATGTAGAAAT
                      ____________________________________________________________
consensus             ATCAGGCGATATTGAGGTGACAATGTCTCTGGACGAGCCGCTAGTCCGGAATGTAGAAAT
 
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rJMSF015B03+          GGCACAGAGGGTAGTTCAAGAAGTTAGAGTGCAAGTCCCTCCTGAAATGTTTGATCCTTC
rJMSF002P20+          GGCACAGAGGGTAGTTCAAGAAGTTAGAGTGCAAGTCCCTCCTGAAATGTTTGATCCTTC
rJMSF039M22+          GGCACAGAGGGTAGTTCAAGAAGTTAGAGTGCAAGTCCCTCCTGAAATGTTTGATCCTTC
rJMSF045H14+          GGCACAGAGGGTAGTTCAAGAAGTTAGAGTGCAAGTCCCTCCTGAAATGTTTGATCCTTC
                      ____________________________________________________________
consensus             GGCACAGAGGGTAGTTCAAGAAGTTAGAGTGCAAGTCCCTCCTGAAATGTTTGATCCTTC
 
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rJMSF015B03+          ACAACTTGTCTGTGGAACGTACGTAGATTCAAGGTTGCTCGTTCTTCGTAGTGTCAATGG
rJMSF002P20+          ACAACTTGTCTGTGGAACGTACGTAGATTCAAGGTTGCTCGTTCTTCGTAGTGTCAATGG
rJMSF039M22+          ACAACTTGTCTGTGGAACGTACGTAGATTCAAGGTTGCTCGTTCTTCGTAGTGTCAATGG
rJMSF045H14+          ACAACTTGTCTGTGGAACGTACGTAGATTCAAGGTTGCTCGTTCTTCGTAGTGTCAATGG
                      ____________________________________________________________
consensus             ACAACTTGTCTGTGGAACGTACGTAGATTCAAGGTTGCTCGTTCTTCGTAGTGTCAATGG
 
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rJMSF015B03+          TTCTGCTCTCCTTTTCACAAGATCTTGTACGCACGAAGAATTGTGAATATATT       
rJMSF002P20+          TTCTGCTCTCCTTTTCACAAGATCTTGTACGCACGAAGAATTGTGAATATATT       
rJMSF039M22+          TTCTGCTCTCCTTTTCACAAGATCTTGTACGCACGAAGAATTGTGAATATATT       
rJMSF045H14+          TTCTGCTCTCCTTTTCACAAGATCTTGTACGCACGAAGAATTGTGAATATATTTGTTTTG
                      ____________________________________________________________
consensus             TTCTGCTCTCCTTTTCACAAGATCTTGTACGCACGAAGAATTGTGAATATATTTGTTTTG