Contig 001461:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013A17Sequence219000935 (2)764001461 (2)ref|XP_007033651.1|6e-110BTB and TAZ domain protein 3 isoform 1 [Theobroma cacao] gb|EOY04577.1| BTB and
JMSF043G23Sequence644000935 (2)ref|XP_009780836.1|2e-43PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Nicotiana sylvestris] r744001461 (2)ref|XP_007033651.1|7e-83BTB and TAZ domain protein 3 isoform 1 [Theobroma cacao] gb|EOY04577.1| BTB and

Alignment

This contig is upended


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rJMSF013A17+                          GTGAACACATTTAGAGCAAGGTTCACTCGACTCGGAAAACGTGA
                      ____________________________________________________________
consensus                             GTGAACACATTTAGAGCAAGGTTCACTCGACTCGGAAAACGTGA
 
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rJMSF013A17+          TAGACGTGCTTCAGTTAGCAAGGAAGTGCGATGCATCACGGCTTTCGTTTGTCTGTACTC
                      ____________________________________________________________
consensus             TAGACGTGCTTCAGTTAGCAAGGAAGTGCGATGCATCACGGCTTTCGTTTGTCTGTACTC
 
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rJMSF013A17+          AGATGATTGTGAGGGACTTCAAAACCATATCGTCAACCGAGGGATGGAAAATAATGAGAC
                      ____________________________________________________________
consensus             AGATGATTGTGAGGGACTTCAAAACCATATCGTCAACCGAGGGATGGAAAATAATGAGAC
 
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rJMSF013A17+          GTTCAAATCCAGCACTCGAACAAGAGCTTTTAGAATATGTCGTGGAAGCAGATACGAGGA
rJMSF043G23+                                                                 GAGGA
                      ____________________________________________________________
consensus             GTTCAAATCCAGCACTCGAACAAGAGCTTTTAGAATATGTCGTGGAAGCAGATACGAGGA
 
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rJMSF013A17+          AACAAGAGCAGCAGAGGAAAATCGAAGAGAAAAAGGTTTATTTGCAACTCTACGAGGCCA
rJMSF043G23+          AACAAGAGCAGCAGAGGAAAATCGAAGAGAAAAAGGTTTATTTGCAACTCTACGAGGCCA
                      ____________________________________________________________
consensus             AACAAGAGCAGCAGAGGAAAATCGAAGAGAAAAAGGTTTATTTGCAACTCTACGAGGCCA
 
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rJMSF013A17+          TGGAAGCCCTCGTTCATATTTGCAAGGATGGGTGTCGGACGATTGGACCTCGAGATAAAG
rJMSF043G23+          TGGAAGCCCTCGTTCATATTTGCAAGGATGGGTGTCGGACGATTGGACCTCGAGATAAAG
                      ____________________________________________________________
consensus             TGGAAGCCCTCGTTCATATTTGCAAGGATGGGTGTCGGACGATTGGACCTCGAGATAAAG
 
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rJMSF013A17+          TGCTGAAAGGAGGCCATGGTGGTTGTAATTTCCCGGCATGCAAGGGACTGGAAACTTTGG
rJMSF043G23+          TGCTGAAAGGAGGCCATGGTGGTTGTAATTTCCCGGCATGCAAGGGACTGGAAACTTTGG
                      ____________________________________________________________
consensus             TGCTGAAAGGAGGCCATGGTGGTTGTAATTTCCCGGCATGCAAGGGACTGGAAACTTTGG
 
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rJMSF013A17+          TCCGCCATTTCTCCGGATGTAGAACCAGAGTTCCTGGCGGATGTGTGCAGTGTAAGCGAA
rJMSF043G23+          TCCGCCATTTCTCCGGATGTAGAACCAGAGTTCCTGGCGGATGTGTGCAGTGTAAGCGAA
                      ____________________________________________________________
consensus             TCCGCCATTTCTCCGGATGTAGAACCAGAGTTCCTGGCGGATGTGTGCAGTGTAAGCGAA
 
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rJMSF013A17+          TGTGGCAGCTTCTCGAACTTCATTCCCGGATGTGCAATGAATCCGACGTTTGCAGCGTTC
rJMSF043G23+          TGTGGCAGCTTCTCGAACTTCATTCCCGGATGTGCAATGAATCCGACGTTTGCAGCGTTC
                      ____________________________________________________________
consensus             TGTGGCAGCTTCTCGAACTTCATTCCCGGATGTGCAATGAATCCGACGTTTGCAGCGTTC
 
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rJMSF013A17+          CTCTTTGTAGGCATTTCAAGGTGAAAGTGGTGCAGCATAGCAAGAAAGAGGAAGTTAAAT
rJMSF043G23+          CTCTTTGTAGGCATTTCAAGGTGAAAGTGGTGCAGCATAGCAAGAAAGAGGAAGTTAAAT
                      ____________________________________________________________
consensus             CTCTTTGTAGGCATTTCAAGGTGAAAGTGGTGCAGCATAGCAAGAAAGAGGAAGTTAAAT
 
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rJMSF013A17+          GGAGAGTGTTATTAAGCAAAGTGCAGGCAGCAAAGATTGCACTTGGCCCTTTCTCATCTC
rJMSF043G23+          GGAGAGTGTTAGTAAGCAAAGTGCAGGCAGCAAAGATTGCACTTGGCCCTTTCTCATCTC
                      ____________________________________________________________
consensus             GGAGAGTGTTATTAAGCAAAGTGCAGGCAGCAAAGATTGCACTTGGCCCTTTCTCATCTC
 
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rJMSF013A17+          GGCGGTCAGCTTTTTTATGACCTCAAATAATATATGGTATATATTCTGCAGACCATATTG
rJMSF043G23+          GGCGGTCAGCTTTTTTATGACCTCAAATAATATATGGTATATATTCTGCAGACCATATTG
                      ____________________________________________________________
consensus             GGCGGTCAGCTTTTTTATGACCTCAAATAATATATGGTATATATTCTGCAGACCATATTG
 
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rJMSF013A17+          TAAGGTTATAGTGTGTAATCTATCAATAGAAGAAATAATGTATTGTAAAA          
rJMSF043G23+          TAAGGTTATAATGTGTAATCTATCAATAGAAGAAATAATGTATTGTAAAATATATATATG
                      ____________________________________________________________
consensus             TAAGGTTATAGTGTGTAATCTATCAATAGAAGAAATAATGTATTGTAAAATATATATATG