Contig 001456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020L19Sequence575000823 (40)ref|XP_008233807.1|1e-113PREDICTED: 40S ribosomal protein S4-1 [Prunus mume]748001456 (4)gb|KCW60005.1|6e-93hypothetical protein EUGRSUZ_H02737 [Eucalyptus grandis]
JMFF031F21Sequence629000823 (40)ref|XP_011084586.1|2e-128PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC715001456 (4)ref|XP_004148191.1|6e-90PREDICTED: 40S ribosomal protein S4-like [Cucumis sativus]
JMFF043E04Sequence646007473 (59)gb|KDP44363.1|3e-108hypothetical protein JCGZ_20043 [Jatropha curcas]599001456 (4)ref|XP_004148191.1|3e-54PREDICTED: 40S ribosomal protein S4-like [Cucumis sativus]
JMSF041N17Sequence768000823 (40)ref|XP_011084586.1|3e-145PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC802001456 (4)ref|XP_011084586.1|1e-113PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041N17+ ACCAGGTTGAAGTATGCCCTTAC
                      ____________________________________________________________
consensus ACCAGGTTGAAGTATGCCCTTAC
 
. : . : . : . : . : . :
rJMFF020L19+ GTCAGG
rJMSF041N17+ CTATCGTGAAGTCATTTCAATTTTAATGCAGCGACATGTTTGGTTGATGGTAAGGTCAGG
                      ____________________________________________________________
consensus CTATCGTGAAGTCATTTCAATTTTAATGCAGCGACATGTTTGGTTGATGGTAAGGTCAGG
 
. : . : . : . : . : . :
rJMFF020L19+ ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
rJMSF041N17+ ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
                      ____________________________________________________________
consensus ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
 
. : . : . : . : . : . :
rJMFF020L19+ AACTTCCGCCTCCTTCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
rJMFF031F21+ TCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
rJMSF041N17+ AACTTCCGCCTCC-TCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
                      ____________________________________________________________
consensus AACTTCCGCCTCCTTCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
 
. : . : . : . : . : . :
rJMFF020L19+ GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
rJMFF031F21+ GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
rJMSF041N17+ GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
                      ____________________________________________________________
consensus GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
 
. : . : . : . : . : . :
rJMFF020L19+ ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMFF031F21+ ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMFF043E04+ ATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMSF041N17+ ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
                      ____________________________________________________________
consensus ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
 
. : . : . : . : . : . :
rJMFF020L19+ TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
rJMFF031F21+ TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
rJMFF043E04+ TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTGACGTN
rJMSF041N17+ TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
                      ____________________________________________________________
consensus TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
 
. : . : . : . : . : . :
rJMFF020L19+ GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMFF031F21+ GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMFF043E04+ GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMSF041N17+ GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
                      ____________________________________________________________
consensus GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
 
. : . : . : . : . : . :
rJMFF020L19+ TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMFF031F21+ TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMFF043E04+ TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMSF041N17+ TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
                      ____________________________________________________________
consensus TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
 
. : . : . : . : . : . :
rJMFF020L19+ GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMFF031F21+ GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMFF043E04+ GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMSF041N17+ GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
                      ____________________________________________________________
consensus GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
 
. : . : . : . : . : . :
rJMFF020L19+ TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMFF031F21+ TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMFF043E04+ TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMSF041N17+ TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
                      ____________________________________________________________
consensus TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
 
. : . : . : . : . : . :
rJMFF020L19+ TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
rJMFF031F21+ TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
rJMFF043E04+ TGCTCAGTCTGCAATCACTGCTTAAA
rJMSF041N17+ TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
                      ____________________________________________________________
consensus TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
 
. : . : . : . : . : . :
rJMFF020L19+ GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAAT
rJMFF031F21+ GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAAT
rJMSF041N17+ GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAATTTTACTTT
                      ____________________________________________________________
consensus GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAATTTTACTTT
 
. : . : . : . : . : . :
rJMSF041N17+ TTGTTAGCAATAGATTTATTATTTTAATGTGTAATTCTGTCCTGTTTTCCGAATTCCTAT
                      ____________________________________________________________
consensus TTGTTAGCAATAGATTTATTATTTTAATGTGTAATTCTGTCCTGTTTTCCGAATTCCTAT