Contig 001454:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M03Sequence382002399 (2)ref|XP_011094438.1|7e-22PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 716001454 (2)ref|XP_009792061.1|7e-112PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400
JMSF041J16Sequence804002399 (2)ref|XP_011094438.1|1e-70PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 631001454 (2)ref|XP_009792061.1|8e-84PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400

Alignment

This contig is upended


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rJMSF003M03+ GAATGTGAAGTCATCAAA
                      ____________________________________________________________
consensus GAATGTGAAGTCATCAAA
 
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rJMSF003M03+ TGTGCTGCTAGACAAGAATGGGGTTGCCTGCATCTCAGATTTCGGGTTGTCGTTGCTTCT
                      ____________________________________________________________
consensus TGTGCTGCTAGACAAGAATGGGGTTGCCTGCATCTCAGATTTCGGGTTGTCGTTGCTTCT
 
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rJMSF003M03+ GAACCCCGTCCACGCCATAGCCAGATTGGGAGGGTACAAGGCCCCAGAACAGGCAGAAAT
rJMSF041J16+ GAGGGTACAAGGCCCCAGAACAGGCAGAAAT
                      ____________________________________________________________
consensus GAACCCCGTCCACGCCATAGCCAGATTGGGAGGGTACAAGGCCCCAGAACAGGCAGAAAT
 
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rJMSF003M03+ CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
rJMSF041J16+ CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
                      ____________________________________________________________
consensus CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
 
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rJMSF003M03+ GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
rJMSF041J16+ GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
                      ____________________________________________________________
consensus GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
 
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rJMSF003M03+ GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
rJMSF041J16+ GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
                      ____________________________________________________________
consensus GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
 
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rJMSF003M03+ AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGGTGTC
rJMSF041J16+ AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGATGTC
                      ____________________________________________________________
consensus AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGGTGTC
 
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rJMSF003M03+ AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
rJMSF041J16+ AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
                      ____________________________________________________________
consensus AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
 
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rJMSF003M03+ TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
rJMSF041J16+ TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
                      ____________________________________________________________
consensus TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
 
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rJMSF003M03+ TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
rJMSF041J16+ TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
                      ____________________________________________________________
consensus TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
 
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rJMSF003M03+ GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
rJMSF041J16+ GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
                      ____________________________________________________________
consensus GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
 
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rJMSF003M03+ ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
rJMSF041J16+ ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
                      ____________________________________________________________
consensus ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
 
. : . : . : . : . : . :
rJMSF003M03+ CTAGCCTAGATAACAGGTGGTCAAGAAACCAGATCCCA
rJMSF041J16+ CTAGCCTAGATAGCAGGTGGTCAAGAAACCAGATCCCATGATTTCAATGTAATTCTTTGC
                      ____________________________________________________________
consensus CTAGCCTAGATAGCAGGTGGTCAAGAAACCAGATCCCATGATTTCAATGTAATTCTTTGC