Contig 001448:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001A05Sequence193006657 (3)766001448 (3)ref|XP_011099291.1|1e-16PREDICTED: zinc finger CCHC domain-containing protein 8 [Sesamum indicum]
JMSF026E10Sequence661006657 (3)ref|XP_009782308.1|63.2PREDICTED: uncharacterized protein LOC104231075 [Nicotiana sylvestris]737001448 (3)ref|XP_011099291.1|4e-18PREDICTED: zinc finger CCHC domain-containing protein 8 [Sesamum indicum]
JMSF040M11Sequence630006657 (3)878001448 (3)ref|XP_009617260.1|156PREDICTED: uncharacterized protein LOC104109615 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M11+                                CTTGGGGAGCTTGATCCACCTCCATGGCTTAACAGAAT
                      ____________________________________________________________
consensus                                   CTTGGGGAGCTTGATCCACCTCCATGGCTTAACAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M11+          GCGGGAAATAGGATATCCACCAGGCTATCTAGATCCAGATAATGAGGATATGCCCTCAGG
                      ____________________________________________________________
consensus             GCGGGAAATAGGATATCCACCAGGCTATCTAGATCCAGATAATGAGGATATGCCCTCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+                                                CAGAGGAAGGAGAAATTCTCGA
rJMSF001A05+                   ATTTGCTGACGAGGAGATTGAAGAGGAACCAGAGGAAGGAGAAATTCTCGA
rJMSF040M11+          GATCACAATATTTGCTGACGAGGAGATTGAAGAGGAAACAGAGGAAGGAGAAATTCTCGA
                      ____________________________________________________________
consensus             GATCACAATATTTGCTGACGAGGAGATTGAAGAGGAACCAGAGGAAGGAGAAATTCTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          GAAGAGTGATCCAGAGCCACCACCTAAGAAAATGAGTGTTGAATTTCCAGGGATAAATGT
rJMSF001A05+          GAAGAGTGATCCAGAGCCACCACCTAAGAAAATGAGTGTTGAATTTCCAGGGATAAATGT
rJMSF040M11+          GAAGAGTGATCCAGAGCCACCACCTAAGAAAATGAGTGTTGAATTTCCAGGGATAAATGT
                      ____________________________________________________________
consensus             GAAGAGTGATCCAGAGCCACCACCTAAGAAAATGAGTGTTGAATTTCCAGGGATAAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          CCCGATACCAGAGGATGCAGATAAATGGCGTTGGGCAGCAGGGTCATCAAGTTGGAAAAT
rJMSF001A05+          CCCGATACCAGAGGATGCAGATAAATGGCGTTGGGCAGCAGGGTCATCAAGTTGGAAAAT
rJMSF040M11+          CCCGATACCAGAGGATGCAGATAAATGGCGTTGGGCAGCAGGGTCATCAAGTTGGAAAAT
                      ____________________________________________________________
consensus             CCCGATACCAGAGGATGCAGATAAATGGCGTTGGGCAGCAGGGTCATCAAGTTGGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TTCAAGAACTTCCTCATACAGTAGGCATAACCATACATCAGACAGAGAGCATTATCTTGA
rJMSF001A05+          TTCAAGAACTTCCTCATACAGTAGGCATAACCATACATCAGACAGAGAGCATTATCTTGA
rJMSF040M11+          TTCAAGAACTTCCTCATACAGTAGGCATAACCATACATCAGACAGAGAGCATTATCTTGA
                      ____________________________________________________________
consensus             TTCAAGAACTTCCTCATACAGTAGGCATAACCATACATCAGACAGAGAGCATTATCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          ACGACAAATGTCCAGGGATTTCCAAGACGAAGGGCATGATCGTAGAACAGAAACTATCAA
rJMSF001A05+          ACGACAAATGTCCAGGGATTTCCAAGACGAAGGGCATGATCGTAGAACAGAAACTATCAA
rJMSF040M11+          ACGACAAATGTCCAGGGATTTCCAAGACGAAGGGCATGATCGTAGAACAGAAACTATCAA
                      ____________________________________________________________
consensus             ACGACAAATGTCCAGGGATTTCCAAGACGAAGGGCATGATCGTAGAACAGAAACTATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          CAGAGGGCATTATCACGAAAAATCGCCTGGCGATTTTGAGGACGAAGGCCCTCCTGGCTG
rJMSF001A05+          CAGAGGGCATTATCACGAAAAATCGCCTGGCGATTTTGAGGACGAAGGCCCTCCTGGCTG
rJMSF040M11+          CAGAGGGCATTATCACGAAAAATCGCCTGGCGATTTTGAGGACGAAGGCCCTCCTGGCTG
                      ____________________________________________________________
consensus             CAGAGGGCATTATCACGAAAAATCGCCTGGCGATTTTGAGGACGAAGGCCCTCCTGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TGGACATGACCCTGGTATGAGCCCCTCTCTATCTCACAGATTCAGAGGCCACGACTCCAA
rJMSF001A05+          TGGACATGACCCTGGTATGAGCCCCTCTCTATCTCACAGATTCAGAGGCCACGACTCCAA
rJMSF040M11+          TGGACATGACCCTGGTATGAGCCCCTCTCTATCTCACAGATTCAGAGGCCACGACTCCAA
                      ____________________________________________________________
consensus             TGGACATGACCCTGGTATGAGCCCCTCTCTATCTCACAGATTCAGAGGCCACGACTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TTTTAGTTCTCCAAGTCCCAGGGATGGTTCTTCAGCATCAAAATCCCATAGTTATGGAAG
rJMSF001A05+          TTTTAGTTCTCCAAGTCCCAGGGATGGTTCTTCAGCATCAAAATCCCATAGTTATGGAAG
rJMSF040M11+          TTTTAGTTCGCCAAGTCCCAGGGATGGTTCTTCAGCATCAAAATCCCATAGTTATGGAAG
                      ____________________________________________________________
consensus             TTTTAGTTCTCCAAGTCCCAGGGATGGTTCTTCAGCATCAAAATCCCATAGTTATGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          ATCCTCGTCGGACAGGGGCAGAAGAAGCCCACTTGTCCATGACAGTTCTTCAAACCACAG
rJMSF001A05+          ATCCTCGTCGGACAGGGGCAGAAGAAGCCCACTTGTCCATGACAGTTCTTCAAACCACAG
rJMSF040M11+          ATCCTCATCGGACAGGGGCAGAAGAAGCCCACTTGTCCATGACAGTTCTTCAAACCACAG
                      ____________________________________________________________
consensus             ATCCTCGTCGGACAGGGGCAGAAGAAGCCCACTTGTCCATGACAGTTCTTCAAACCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TTCATACCCAAGATGACTATTATTCACTAATTTCCTCACACCACCTCCAATGGTGGTGAA
rJMSF001A05+          TTCATACCCAAGATGACTATTATTCACTAATTTCCTCACACCACCTCCAATGGTGGTGAA
rJMSF040M11+          TTCATACCCAAGATGACTATTATTCACTAATTTCCTCACACCACCTCCAATGGTGGTGAA
                      ____________________________________________________________
consensus             TTCATACCCAAGATGACTATTATTCACTAATTTCCTCACACCACCTCCAATGGTGGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TGAAATGAGAAGATAATGGATGTCTCTATAATTTTTTGTTTTCAAGATGTTAGTTCCTCA
rJMSF001A05+          TGAAATGAGAAGATAATGGATGTCTCTATAATTTTTTGTTTTCAAGATGTTAGTTCCTCA
rJMSF040M11+          TGAAATGAGAAGATAATGGATGTCTCTATAATTTTTTGTTTTCAAGATGTTAGTTCCTCA
                      ____________________________________________________________
consensus             TGAAATGAGAAGATAATGGATGTCTCTATAATTTTTTGTTTTCAAGATGTTAGTTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          TGGCTGTACATAAATTAGACATGAGAGGAAATTAGATGGATATGTGACTTTCATTTAATG
rJMSF001A05+          TGGCTGTACATAAATTAGACATGAGAGGAAATTAGATGGATATGTGACTTTCATTTAATG
rJMSF040M11+          TGGCTGTACATAAATTAGACATGAGAGGAAATTAGATGGATATGTGACTTTCATTTAATG
                      ____________________________________________________________
consensus             TGGCTGTACATAAATTAGACATGAGAGGAAATTAGATGGATATGTGACTTTCATTTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026E10+          AAGATTTTGTAATAATTAAAGTTTGTTTCTCATATGACTCT                   
rJMSF001A05+          AAGATTTTGTAATAATTAAAGTTTGTTTCTCATATGACTCT                   
rJMSF040M11+          AAGATTTTGTAATAATTAAAGTTTGTTTCTCATAAGACTCTGTATACATTTCATCTTTCT
                      ____________________________________________________________
consensus             AAGATTTTGTAATAATTAAAGTTTGTTTCTCATATGACTCTGTATACATTTCATCTTTCT