Contig 001438:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018M10Sequence569013477 (3)ref|XP_009796490.1|92.0PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]750001438 (2)ref|XP_009796490.1|110PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]
JMSF037O20Sequence647013477 (3)ref|XP_009796490.1|92.0PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]713001438 (2)ref|XP_009796490.1|110PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF018M10+          GAAGCTGTTAAAAGAGCAAAGTTGTTGATTGCTGAGGCTGAGAAGGCGGCAAAGGCTCTT
                      ____________________________________________________________
consensus             GAAGCTGTTAAAAGAGCAAAGTTGTTGATTGCTGAGGCTGAGAAGGCGGCAAAGGCTCTT
 
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rJMFF018M10+          GAGATTGCTGCCAGGCAGAGTCCTGTTGCTCGAGCATCCCTTGTTGAGACCAGGAATCTC
rJMSF037O20+                 CTGCCAGGCAGAGTCCTGTTGCTCGAGCATCCCTTGTTGAGACCAGGAATCTC
                      ____________________________________________________________
consensus             GAGATTGCTGCCAGGCAGAGTCCTGTTGCTCGAGCATCCCTTGTTGAGACCAGGAATCTC
 
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rJMFF018M10+          ATTGCAGAAGCAATTCAATCCATTGACTCCATAGATATGGAAGAGATACTTTCGGGTCAA
rJMSF037O20+          ATTGCAGAAGCAATTCAATCCATTGACTCCATAGATATGGAAGAGATACTTTCGGGTCAA
                      ____________________________________________________________
consensus             ATTGCAGAAGCAATTCAATCCATTGACTCCATAGATATGGAAGAGATACTTTCGGGTCAA
 
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rJMFF018M10+          AATGAGGGAGACCAATTACTTACACTGCCTGAAATCGCCAATGTTGATGATTTAACAGAT
rJMSF037O20+          AATGAGGGAGACCAATTACTTACACTGCCTGAAATCGCCAATGTTGATGATTTAACAGAT
                      ____________________________________________________________
consensus             AATGAGGGAGACCAATTACTTACACTGCCTGAAATCGCCAATGTTGATGATTTAACAGAT
 
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rJMFF018M10+          GCAGACGCGGAAGATTTGGATGAAATTGACAAGAGAAAAACAAATGGAGCCCAAGTATTG
rJMSF037O20+          GCAGACGCGGAAGATTTGGATGAAATTGACAAGAGAAAAACAAATGGAGCCCAAGTATTG
                      ____________________________________________________________
consensus             GCAGACGCGGAAGATTTGGATGAAATTGACAAGAGAAAAACAAATGGAGCCCAAGTATTG
 
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rJMFF018M10+          ATGCCCAATGGTGACGGTTTTCACAGCTTCAACTTTACCAAAAACTTCCATGGTTTATTG
rJMSF037O20+          ATGCCCAATGGTGACGGTTTTCACAGCTTCAACTTTACCAAAAACTTCCATGGTTTATTG
                      ____________________________________________________________
consensus             ATGCCCAATGGTGACGGTTTTCACAGCTTCAACTTTACCAAAAACTTCCATGGTTTATTG
 
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rJMFF018M10+          AACGGTAATGAAACAGCAGTCTTTTCAAGCTCAGACGACTATGATTTACTTGGCAGCAAG
rJMSF037O20+          AACGGTAATGAAACAGCAGTCTTTTCAAGCTCAGACGACTATGATTTACTTGGCAGCAAG
                      ____________________________________________________________
consensus             AACGGTAATGAAACAGCAGTCTTTTCAAGCTCAGACGACTATGATTTACTTGGCAGCAAG
 
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rJMFF018M10+          GAAAATTTGTACCAAGTGATTTCAAGTGATGTGGCACCACCACCAGTTGAGGAAGTGATG
rJMSF037O20+          GAAAATTTGTACCAAGTGATTTCAAGTGATGTGGCACCACCACCAGTTGAGGAAGTGATG
                      ____________________________________________________________
consensus             GAAAATTTGTACCAAGTGATTTCAAGTGATGTGGCACCACCACCAGTTGAGGAAGTGATG
 
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rJMFF018M10+          CACCCCTTCGAGTCTGGTGATCACAAGGCAAATGAGGTTGAAGAAGATGAGCACAAGTCA
rJMSF037O20+          CACCCCTTCGAGTCTGGTGATCACAAGGCAAATGAGGTTGAAGAAGATGAGCACAAGTCA
                      ____________________________________________________________
consensus             CACCCCTTCGAGTCTGGTGATCACAAGGCAAATGAGGTTGAAGAAGATGAGCACAAGTCA
 
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rJMFF018M10+          CCGCCACATGAAATGACATTGCAGTCCGAGCCATTGCCAAATGGATTGATATCTCAGCCC
rJMSF037O20+          CCGCCACATGAAATGACATTGCAGTCCGAGCCATTGCCAAATGGATTGATATCTCAGCCC
                      ____________________________________________________________
consensus             CCGCCACATGAAATGACATTGCAGTCCGAGCCATTGCCAAATGGATTGATATCTCAGCCC
 
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rJMFF018M10+          GAGAGTGCCCATCCCGCGTCAAATAGCACAACCACAACCAAGCAATGGATTTGCGGGAGA
rJMSF037O20+          GAGAGTGCCCATCCCGCGTCAAATAGCACAACCACAACCAAGCAATGGATTTGCGGGAGA
                      ____________________________________________________________
consensus             GAGAGTGCCCATCCCGCGTCAAATAGCACAACCACAACCAAGCAATGGATTTGCGGGAGA
 
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rJMFF018M10+          TTGGTTGATGTAGCCAAGGAAGGTTAGATTCAGTTACGATATATTTACATATTTATCTTA
rJMSF037O20+          TTGGTTGATGTAGCCAAGGAAGGTTAGATTCAGTTACGATATATTTACATATTTATCTTA
                      ____________________________________________________________
consensus             TTGGTTGATGTAGCCAAGGAAGGTTAGATTCAGTTACGATATATTTACATATTTATCTTA
 
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rJMFF018M10+          TGCTGTCATTCACTCATTCCAACTGGAGGA                              
rJMSF037O20+          TGCTGTCATTCACTCATTCCAACTGGAGGAGGCATAGAAGACTACTTTCATCTTAGGTCA
                      ____________________________________________________________
consensus             TGCTGTCATTCACTCATTCCAACTGGAGGAGGCATAGAAGACTACTTTCATCTTAGGTCA