Contig 001434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015N03Sequence492002173 (2)ref|XP_009771164.1|4e-44PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ni653001434 (2)gb|AES75162.2|3e-04RNA polymerase II-binding domain protein [Medicago truncatula]
JMSF037J07Sequence681002173 (2)ref|XP_006352321.1|2e-79PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [So760001434 (2)ref|XP_004250299.1|3e-09PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [So

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037J07+ GGCTGCTGCCTNTATGAGCAGTGGCTNGAAAGAGGATTTT
                      ____________________________________________________________
consensus GGCTGCTGCCTNTATGAGCAGTGGCTNGAAAGAGGATTTT
 
. : . : . : . : . : . :
rJMSF037J07+ TTCCAANTTACCTTACGGTTCTCCAGAGAAGAGGCCCAAGNTGGACAATCCGACGACTTT
                      ____________________________________________________________
consensus TTCCAANTTACCTTACGGTTCTCCAGAGAAGAGGCCCAAGNTGGACAATCCGACGACTTT
 
. : . : . : . : . : . :
rJMSF015N03+ TGATATGAATAAAGCAGATGGAGGTGGTTCCGCNTATTTCTCTACAGGCATGCAATC
rJMSF037J07+ TTNTGATATGAATAAAGCAGATGGAGGTGGTTCCGCCTATTTCTNTACAGGCATGCAATC
                      ____________________________________________________________
consensus TTNTGATATGAATAAAGCAGATGGAGGTGGTTCCGCCTATTTCTCTACAGGCATGCAATC
 
. : . : . : . : . : . :
rJMSF015N03+ CTTGCCCCAGACAAATCCTATGCCCGGTGCATTCCCTCCACCACCGNCCCCACCANCCAT
rJMSF037J07+ CTTGCCCCAGACAAATCCTATGCCCGCTGCATTCCCTCCACCACCGCCCCCACCACCCAT
                      ____________________________________________________________
consensus CTTGCCCCAGACAAATCCTATGCCCGGTGCATTCCCTCCACCACCGCCCCCACCACCCAT
 
. : . : . : . : . : . :
rJMSF015N03+ ACNTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
rJMSF037J07+ ACCTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
                      ____________________________________________________________
consensus ACCTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
 
. : . : . : . : . : . :
rJMSF015N03+ TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
rJMSF037J07+ TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
                      ____________________________________________________________
consensus TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
 
. : . : . : . : . : . :
rJMSF015N03+ AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
rJMSF037J07+ AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
                      ____________________________________________________________
consensus AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
 
. : . : . : . : . : . :
rJMSF015N03+ TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
rJMSF037J07+ TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
                      ____________________________________________________________
consensus TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
 
. : . : . : . : . : . :
rJMSF015N03+ TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
rJMSF037J07+ TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
                      ____________________________________________________________
consensus TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
 
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rJMSF015N03+ GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
rJMSF037J07+ GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
                      ____________________________________________________________
consensus GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
 
. : . : . : . : . : . :
rJMSF015N03+ GAAGTGTTTTAATNTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
rJMSF037J07+ GAAGTGTTTTAATCTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
                      ____________________________________________________________
consensus GAAGTGTTTTAATCTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
 
. : . : . : . : . : . :
rJMSF015N03+ CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
rJMSF037J07+ CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
                      ____________________________________________________________
consensus CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
 
. : . : . : . : . : . :
rJMSF015N03+ GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAATCAGTTGGTATAGGACT
rJMSF037J07+ GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAACCAGTTGGTATAGGACTTTGT
                      ____________________________________________________________
consensus GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAATCAGTTGGTATAGGACTTTGT