Contig 001431:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006L02Sequence439000743 (45)ref|XP_009780936.1|7e-69PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico479001431 (3)emb|CDP04652.1|5e-05unnamed protein product [Coffea canephora]
JMSF010L03Sequence324013275 (4)ref|XP_009629140.1|1e-36PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)
JMSF037B15Sequence682013275 (4)ref|XP_009629140.1|7e-129PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF010L03+ ATGAGCCCTTTAGTCTGAAAGAGTG
rJMSF037B15+ TAAACCATGAGCCCTTTAGTCTGAAAGAGTG
                      ____________________________________________________________
consensus TAAACCATGAGCCCTTTAGTCTGAAAGAGTG
 
. : . : . : . : . : . :
rJMSF010L03+ TTTCGTGGNTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
rJMSF037B15+ TTTCGTGGTTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
                      ____________________________________________________________
consensus TTTCGTGGTTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
 
. : . : . : . : . : . :
rJMSF010L03+ TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
rJMSF037B15+ TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
                      ____________________________________________________________
consensus TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
 
. : . : . : . : . : . :
rJMSF010L03+ TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
rJMSF037B15+ TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
                      ____________________________________________________________
consensus TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
 
. : . : . : . : . : . :
rJMSF010L03+ GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
rJMSF006L02+ GGACGAAATGA
rJMSF037B15+ GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
                      ____________________________________________________________
consensus GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
 
. : . : . : . : . : . :
rJMSF010L03+ AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
rJMSF006L02+ AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
rJMSF037B15+ AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
                      ____________________________________________________________
consensus AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
 
. : . : . : . : . : . :
rJMSF010L03+ GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
rJMSF006L02+ GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
rJMSF037B15+ GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
                      ____________________________________________________________
consensus GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
 
. : . : . : . : . : . :
rJMSF010L03+ CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
rJMSF006L02+ CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
rJMSF037B15+ CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
                      ____________________________________________________________
consensus CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
 
. : . : . : . : . : . :
rJMSF010L03+ GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
rJMSF006L02+ GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
rJMSF037B15+ GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
                      ____________________________________________________________
consensus GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
 
. : . : . : . : . : . :
rJMSF010L03+ GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
rJMSF006L02+ GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
rJMSF037B15+ GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
                      ____________________________________________________________
consensus GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
 
. : . : . : . : . : . :
rJMSF010L03+ ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
rJMSF006L02+ ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
rJMSF037B15+ ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
                      ____________________________________________________________
consensus ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
 
. : . : . : . : . : . :
rJMSF010L03+ TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
rJMSF006L02+ TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
rJMSF037B15+ TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
                      ____________________________________________________________
consensus TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
 
. : . : . : . : . : . :
rJMSF010L03+ CCATATCCCCTTTTACCTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGT
rJMSF006L02+ CCAT
rJMSF037B15+ CCATATCCCCTTTTA-CTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGTTGTC
                      ____________________________________________________________
consensus CCATATCCCCTTTTACCTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGTTGTC