Contig 001428:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F08Sequence385002340 (4)221001428 (3)
JMSF033M13Sequence655002340 (4)210001428 (3)
JMSF036E13Sequence679008752 (6)emb|CDP02488.1|2e-27unnamed protein product [Coffea canephora]226001428 (3)

Alignment

This contig is upended


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rJMSF033M13+                    AAGNGGNAGGNGNTTTTCCNCNAAAAAAAAAAAGACTTGAAGTACTCACC
rJMSF002F08+                                            AAAAAAAAAGACTTGAAGTACTCACC
rJMSF036E13+                                            AAAAAAAAAGACTTGAAGTACTCACC
                      ____________________________________________________________
consensus                       AAGNGGNAGGNGNTTTTCCNCNAAAAAAAAAAAGACTTGAAGTACTCACC
 
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rJMSF033M13+          ATACTTTGACAGACGGTGTATTTGCTATCCTTCCTCTGAAGCTTTGTGAAGATGTGATTA
rJMSF002F08+          ATACTTTGACAGACGGTGTATTTGCTATCCTTCCTCTGAAGCTTTGTGAAGATGTGATTA
rJMSF036E13+          ATACTTTGACAGACGGTGTATTTGCTATCCTTCCTCTGAAGCTTTGTGAAGATGTGATTA
                      ____________________________________________________________
consensus             ATACTTTGACAGACGGTGTATTTGCTATCCTTCCTCTGAAGCTTTGTGAAGATGTGATTA
 
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rJMSF033M13+          TTTAGCATCTATAATGCATAGCCAAGAATGTGGTGCATTTAGAGAACTATTTCTCCAATT
rJMSF002F08+          TTTAGCATCTATAATGCATAGCCAAGAATGTGGTGCATTTAGAGAACTATTTCTCCAATT
rJMSF036E13+          TTTAGCATCTATAATGCATAGCCAAGAATGTGGTGCATTTAGAGAACTATTTCTCCAATT
                      ____________________________________________________________
consensus             TTTAGCATCTATAATGCATAGCCAAGAATGTGGTGCATTTAGAGAACTATTTCTCCAATT
 
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rJMSF033M13+          CCATCTTGTTGGGTTGGTTGAATTGTGAGTCTTTAGTCTT                    
rJMSF002F08+          CCATCTTGTTGGGTTGGTTGAATT                                    
rJMSF036E13+          CCATCTTGTTGGGTTGGTTGAATTGTGAGTCTTTAGTCTTTACAAATTGTATGAAACATT
                      ____________________________________________________________
consensus             CCATCTTGTTGGGTTGGTTGAATTGTGAGTCTTTAGTCTTTACAAATTGTATGAAACATT