Contig 001415:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004G08Sequence398012072 (3)472001415 (2)ref|XP_010254142.1|2e-47PREDICTED: serine/threonine-protein kinase AFC3 isoform X3 [Nelumbo nucifera]
JMSF032G04Sequence686012072 (3)emb|CDP18483.1|5e-61unnamed protein product [Coffea canephora]727001415 (2)ref|XP_010254142.1|2e-105PREDICTED: serine/threonine-protein kinase AFC3 isoform X3 [Nelumbo nucifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G04+                                                               GAGTTCA
                      ____________________________________________________________
consensus                                                                  GAGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G04+          GTTGATATGAACTGCAGGTGCNTGCCAAAATCTAGTGCTATTAAGCTGATTGATTTTGGC
                      ____________________________________________________________
consensus             GTTGATATGAACTGCAGGTGCNTGCCAAAATCTAGTGCTATTAAGCTGATTGATTTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G04+          AGTACCGTGTTTGACGATAAGCTTCATAGTTCCATTGTATGCACAAGGCACTACAGAGCA
                      ____________________________________________________________
consensus             AGTACCGTGTTTGACGATAAGCTTCATAGTTCCATTGTATGCACAAGGCACTACAGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G04+          CCAGAGATTATTCTAGGTCTAGGATGGACATATCCCTGTGACCTATGGAGCGTAGGCTGT
                      ____________________________________________________________
consensus             CCAGAGATTATTCTAGGTCTAGGATGGACATATCCCTGTGACCTATGGAGCGTAGGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G04+          ATACTTGTTGAACTTTGCTCGGGTGAAGCTCTTTTTCAGACACACGAGAACTTGGAGCAT
                      ____________________________________________________________
consensus             ATACTTGTTGAACTTTGCTCGGGTGAAGCTCTTTTTCAGACACACGAGAACTTGGAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+              CAATGATGGAGAGAGTGTTGGGCCCCCTGCCTCAGCACATGATTCAAAAAGCAAAT
rJMSF032G04+          TTGGCAATGATGGAGAGAGTGTTGGGCCCCCTGCCTCAGCACATGATTCAAAAAGCAAAT
                      ____________________________________________________________
consensus             TTGGCAATGATGGAGAGAGTGTTGGGCCCCCTGCCTCAGCACATGATTCAAAAAGCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          CAAGGTGCAGATAAATATTTCAAGAGATCAAGATTGAATTGGCCTGAAGGTGCAGTATCA
rJMSF032G04+          CAAGGTGCAGATAAATATTTCAAGAGATCAAGATTGAATTGGCCTGAAGGTGCAGTATCA
                      ____________________________________________________________
consensus             CAAGGTGCAGATAAATATTTCAAGAGATCAAGATTGAATTGGCCTGAAGGTGCAGTATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          AGGGAGAGCATCAGAGCGGTAAACAAGTTGGATCGACTTAAGGATCTTGTATCACGCCAT
rJMSF032G04+          AGGGAGAGCATCAGAGCGGTAAACAAGTTGGATCGACTTAAGGATCTTGTATCACGCCAT
                      ____________________________________________________________
consensus             AGGGAGAGCATCAGAGCGGTAAACAAGTTGGATCGACTTAAGGATCTTGTATCACGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          GTAGAATCCTCAAGATCACCCCTTATCGACTTGTTACAGGGCTTATTGAAGTTCGATCCA
rJMSF032G04+          GTAGAATCCTCAAGATCACCCCTTATCGACTTGTTACAGGGCTTATTGAAGTTCGATCCA
                      ____________________________________________________________
consensus             GTAGAATCCTCAAGATCACCCCTTATCGACTTGTTACAGGGCTTATTGAAGTTCGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          TCTGAGCGACTCACTGCTGAAGAAGCACTTAACCATCCCTTCTTCAGAAATCCAGCCTAA
rJMSF032G04+          TCTGAGCGACTCACTGCTGAAGAAGCACTTAACCATCCCTTCTTCAGAAATCCAGCCTAA
                      ____________________________________________________________
consensus             TCTGAGCGACTCACTGCTGAAGAAGCACTTAACCATCCCTTCTTCAGAAATCCAGCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          CCAAAGTGCTTATTTTGTAATTCCTAATTGATTTTGTTAGAGGCTTCAGCCTGGGATTTT
rJMSF032G04+          CCAAAGTGCTTATTTTGTAATTCCTAATTGATTTTGTTAGAGGCTTCAGCCTGGGATTTT
                      ____________________________________________________________
consensus             CCAAAGTGCTTATTTTGTAATTCCTAATTGATTTTGTTAGAGGCTTCAGCCTGGGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          GATTTTTTATCATGTTCATTTTAAATGTATTGTACATTCATTCGATTGACTTACATGTTT
rJMSF032G04+          GATTTTTTATCATGTTCATTTTAAATGTATTGTACATTCATTCGATTGACTTACATGTTT
                      ____________________________________________________________
consensus             GATTTTTTATCATGTTCATTTTAAATGTATTGTACATTCATTCGATTGACTTACATGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF004G08+          ATTTCAATAATTAGGAACATAATAGGAGACTTCAGAGTTGGTAAGAACCC          
rJMSF032G04+          ATTTCAATAATTAGGAACATAATAGGAAACTTCAGAGTTGGTAAGAACCCCAAATTTGTA
                      ____________________________________________________________
consensus             ATTTCAATAATTAGGAACATAATAGGAGACTTCAGAGTTGGTAAGAACCCCAAATTTGTA