Contig 001404:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C06Sequence434000947 (3)ref|XP_007018232.1|3e-13Homeodomain-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY15457.1| 773001404 (4)
JMSF030D16Sequence747001404 (4)
JMSF031L20Sequence650000947 (3)gb|KDP41486.1|2e-30hypothetical protein JCGZ_15893 [Jatropha curcas]668001404 (4)
JMSF044K21Sequence804000947 (3)gb|KDP41486.1|2e-50hypothetical protein JCGZ_15893 [Jatropha curcas]702001404 (4)

Alignment

This contig is upended


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rJMSF014C06+                                             CCAAATNGTACCNACTCTACTCCAG
                      ____________________________________________________________
consensus                                                CCAAATNGTACCNACTCTACTCCAG
 
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rJMSF014C06+          CATCTGAGCTTGACACAAAAACTGCAAAGGATTCTGTTATCTCTGGCTCGGAAACTGTAA
rJMSF044K21+                                                         TCGGAAACTGTAA
                      ____________________________________________________________
consensus             CATCTGAGCTTGACACAAAAACTGCAAAGGATTCTGTTATCTCTGGCTCGGAAACTGTAA
 
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rJMSF031L20+           GGAAAAGCCAGCCAAAGAGAGTCGAGCACCTGGCCCATGCAATTCCCCTGAAGGCAATA
rJMSF014C06+          TGGAAAAGCCAGCCAAAGAGAGTCGAGCACCTGGCCCATGCAATTCCCCTGAAGGCAATA
rJMSF044K21+          TGGAAAAGCCAGNCAAAGAGAGTCGAGCACCTGGCCCATGCAATTCCCCTGAAGGCAATA
rJMSF030D16+                                           GCCCATGCAATTCCCCTGAAGGCAATA
                      ____________________________________________________________
consensus             TGGAAAAGCCAGCCAAAGAGAGTCGAGCACCTGGCCCATGCAATTCCCCTGAAGGCAATA
 
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rJMSF031L20+          AAGCTGCTTCCACCAAAGAAGTGCCATTGGAGTTGGCCCAAGTGGACCAAACTGCTATTC
rJMSF014C06+          AAGCTGCTTCCACCAAAGAAGTGCCATTGGAGTTGGCCCAAGTGGACCAAACTGCTATTC
rJMSF044K21+          AAGCTGCTTCCACCAAAGAAGTGCCATTGGAGTTGGCCCAAGTGGACCAAACTGCTATTC
rJMSF030D16+          AAGCTGCTTCCACCAAAGAAGTGCCATTGGAGTTGGCCCAAGTGGACCAAACTGCTATTC
                      ____________________________________________________________
consensus             AAGCTGCTTCCACCAAAGAAGTGCCATTGGAGTTGGCCCAAGTGGACCAAACTGCTATTC
 
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rJMSF031L20+          CAGCCAAAGAGAAGATTGAAGAAACTTGTTTTTCAGGTGATGCACCAAAGGAGAATGGAC
rJMSF014C06+          CAGCCAAAGAGAAGATTGAAGAAACTTGTTTTTCAGGTGATGCACCAAAGGAGAATGGAC
rJMSF044K21+          CAGCCAAAGAGAAGATTGAAGAAACTTGTTTTTCAGGTGATGCACCAAAGGAGAATGGAC
rJMSF030D16+          CAGCCAAAGAGAAGATTGAAGAAACTTGTTTTTCAGGTGATGCACCAAAGGAGAATGGAC
                      ____________________________________________________________
consensus             CAGCCAAAGAGAAGATTGAAGAAACTTGTTTTTCAGGTGATGCACCAAAGGAGAATGGAC
 
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rJMSF031L20+          AAAGGGATCAAGCCTCTGTTTCTACAGCTAGTGCTGCAAACATTTGTGTTCAAGAAAAGC
rJMSF014C06+          AAAGGGATCAAGCCTCTGTTTCTACAGCTAGTGCTGCAAACATTTGTGTTCAAGAAAAGC
rJMSF044K21+          AAAGGGATCAAGCCTCTGTTTCTACAGCTAGTGCTGCAAACATTTGTGTTCAAGAAAAGC
rJMSF030D16+          AAAGGGATCAAGCCTCTGTTTCTACAGCTAGTGCTGCAAACATTTGTGTTCAAGAAAAGC
                      ____________________________________________________________
consensus             AAAGGGATCAAGCCTCTGTTTCTACAGCTAGTGCTGCAAACATTTGTGTTCAAGAAAAGC
 
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rJMSF031L20+          AAATCAACTCTTCATCAACGACTGATGTAACTACAGTCAAATGTTCTGCTAATGACCGCA
rJMSF014C06+          AAATCAACTCTTCATCAACGACTGATGTAACTACAGTCAAATGTTCTGCTAATGACCGCA
rJMSF044K21+          AAATCAACTCTTCATCAACGACTGATGTAACTACAGTCAAATGTTCTGCTAATGACCGCA
rJMSF030D16+          AAATCAACTCTTCATCAACGACTGATGTAACTACAGTCAAATGTTCTGCTAATGACCGCA
                      ____________________________________________________________
consensus             AAATCAACTCTTCATCAACGACTGATGTAACTACAGTCAAATGTTCTGCTAATGACCGCA
 
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rJMSF031L20+          ACCAGGCTGAGGTTGAGTGTGCAAGCTCAAATGACAACAGTGCAATAGTTTCACCAGTTG
rJMSF014C06+          ACCAGGCTGAGGTTGAGTGTGCAAGCTCAAATGACAACAGTGCAATAGTTTCACCAGTTG
rJMSF044K21+          ACCAGGCTGAGGTTGAGTGTGCAAGCTCAAATGACAACAGTGCAATAGTTTCACCAGTTG
rJMSF030D16+          ACCAGGCTGAGGTTGAGTGTGCAAGCTCAAATGACAACAGTGCAATAGTTTCACCAGTTG
                      ____________________________________________________________
consensus             ACCAGGCTGAGGTTGAGTGTGCAAGCTCAAATGACAACAGTGCAATAGTTTCACCAGTTG
 
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rJMSF031L20+          GGAACACTAGCAAGGAGATGAATGAAAAGCAACCCGCAAATAGAAATCAAATAGACCCGT
rJMSF014C06+          GGAACACTAGCAAGGAGATGAATGAAAAGCAACCCGCAAATAGAAATCAAATAGACCCGT
rJMSF044K21+          GGAACACTAGCAAGGAGATGAATGAAAAGCAACCCGCAAATAGAAATCAAATAGACCCGT
rJMSF030D16+          GGAACACTAGCAAGGAGATGAATGAAAAGCAACCCGCAAATAGAAATCAAATAGACCCGT
                      ____________________________________________________________
consensus             GGAACACTAGCAAGGAGATGAATGAAAAGCAACCCGCAAATAGAAATCAAATAGACCCGT
 
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rJMSF031L20+          CGAGTATGGCTGTGGATGGGGCTGATGAGGAAGTAACTTGAAGAGAGAATACTGGAGAGT
rJMSF014C06+          CGAGTATGGCTGTGGATGGGGCTGATGAGGAAGTAACTTGAAGAGAGAATACTGGAGAGT
rJMSF044K21+          CGAGTATGGCTGTGGATGGGGCTGATGAGGAAGTAACTTGAAGAGAGAATACTGGAGAGT
rJMSF030D16+          CGAGTATGGCTGTGGATGGGGCTGATGAGGAAGTAACTTGAAGAGAGAATACTGGAGAGT
                      ____________________________________________________________
consensus             CGAGTATGGCTGTGGATGGGGCTGATGAGGAAGTAACTTGAAGAGAGAATACTGGAGAGT
 
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rJMSF031L20+          AATGGCGTTCTCTTGGTCCTCCATTGTACGTATTGTTTGATTCTCAACCACTGCAGTATA
rJMSF014C06+          AATGGCGTTCTCTTGGTCCTCCATTGTACGTATTGTTTGATTCTCAACCACTGCAGTATA
rJMSF044K21+          AATGGCGTTCTCTTGGTCCTCCATTGTACGTATTGTTTGATTCTCAACCACTGCAGTATA
rJMSF030D16+          AATGGCGTTCTCTTGGTCCTCCATTGTACGTATTGTTTGATTCTCAACCACTGCAGTATA
                      ____________________________________________________________
consensus             AATGGCGTTCTCTTGGTCCTCCATTGTACGTATTGTTTGATTCTCAACCACTGCAGTATA
 
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rJMSF031L20+          CCCAAACACCCCCCACCTTCCTTCCCTGTTTGCCATTTCTTTTCTCTATATAGGTTTGTA
rJMSF014C06+          CCCAAACACCCCCCACCTTCCTTCCCTGTTTGCCATTTCTTTTCTCTATATAGGTTTGTA
rJMSF044K21+          CCCAAACACCCCCCACCTTCCTTCCCTGTTTGCCATTTCTTTTCTCTATATAGGTTTGTA
rJMSF030D16+          CCCAAACACCCCCCACCTTCCTTCCCTGTTTGCCATTTCTTTTCTCTATATAGGTTTGTA
                      ____________________________________________________________
consensus             CCCAAACACCCCCCACCTTCCTTCCCTGTTTGCCATTTCTTTTCTCTATATAGGTTTGTA
 
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rJMSF031L20+          GATGTAGCACGCAAAGAAAGGTATACAGTGTTTATATATCTGTATGGCCTGTGTAAACTA
rJMSF014C06+          GATGTAGCACGCAAAGAAAGGTATACAGTGTTTATATATCTGTATGGCCTGTGTAAACTA
rJMSF044K21+          GATGTAGCACGCAAAGAAAGGTATACAGTGTTTATATATCTGTATGGCCTGTGTAAACTA
rJMSF030D16+          GATGTAGCACGCAAAGAAAGGTATACAGTGTTTATATATCTGTATGGCCTGTGTAAACTA
                      ____________________________________________________________
consensus             GATGTAGCACGCAAAGAAAGGTATACAGTGTTTATATATCTGTATGGCCTGTGTAAACTA
 
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rJMSF031L20+          ATATTTTTT                                                   
rJMSF014C06+          ATATTTTTTTTAATTGTTTCTGTATGGA                                
rJMSF044K21+          ATATTTTTTTTAATTGTTTCTGTATGGA                                
rJMSF030D16+          ATATTTTTTTTAATTGTTTCTGTATGGATGGTTAAATATGTTAATGAGCTATAGTGAGTT
                      ____________________________________________________________
consensus             ATATTTTTTTTAATTGTTTCTGTATGGATGGTTAAATATGTTAATGAGCTATAGTGAGTT
 
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rJMSF030D16+          ATAGTGAGTCTCACCCCATCAGCCTACTTTGAAAGTACTACTAATATGAGGAATTTTTTT
                      ____________________________________________________________
consensus             ATAGTGAGTCTCACCCCATCAGCCTACTTTGAAAGTACTACTAATATGAGGAATTTTTTT