clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF026I10 | Sequence | 695 | 001401 (3) | ref|XP_009758507.1| | 2e-117 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri | 750 | 001401 (3) | ref|XP_010055992.1| | 2e-82 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Eucalyptus grandis] |
JMSF030B12 | Sequence | 661 | 017860 | ref|XP_009758507.1| | 5e-85 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri | 767 | 001401 (3) | ref|XP_009758507.1| | 1e-97 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
JMSF026I10- GAGTCAAATACCTTATCGGCTCCGCCGGCCCCAGCGGCTTCGGCTCC
____________________________________________________________
consensus GAGTCAAATACCTTATCGGCTCCGCCGGCCCCAGCGGCTTCGGCTCC
. : . : . : . : . : . :
JMSF026I10- AAATCGACCGCCGAGGAGGTTACCGAGATGAGTCCTCGTCTGTGCTCCGTCACCGCCATC
____________________________________________________________
consensus AAATCGACCGCCGAGGAGGTTACCGAGATGAGTCCTCGTCTGTGCTCCGTCACCGCCATC
. : . : . : . : . : . :
JMSF026I10- ATCACTGGTGCGACGTCGGGAATCGGAGCGGAGACGGCTCGTGTGTTGGCCAAGCGCGGA
____________________________________________________________
consensus ATCACTGGTGCGACGTCGGGAATCGGAGCGGAGACGGCTCGTGTGTTGGCCAAGCGCGGA
. : . : . : . : . : . :
JMSF026I10- GCACGCCTGGTGCTTCCGGCTCGGAGCGTGAAGGCCGCCGAGGAGACGAAGGCTCGTATT
____________________________________________________________
consensus GCACGCCTGGTGCTTCCGGCTCGGAGCGTGAAGGCCGCCGAGGAGACGAAGGCTCGTATT
. : . : . : . : . : . :
JMSF026I10- CTGTCGGAGTCGCCGGGCGCGGAGATCGTCGTGATGCCGCTCGATCTTAGTTCTCTCGCT
____________________________________________________________
consensus CTGTCGGAGTCGCCGGGCGCGGAGATCGTCGTGATGCCGCTCGATCTTAGTTCTCTCGCT
. : . : . : . : . : . :
JMSF026I10- TCTGTACGGAGGTTTGTTGCAGAGTTCGAATCTCTCCATCTGCCTCTCAATCTCCTCATA
rJMSF026I10+ A
rJMSF030B12+ A
____________________________________________________________
consensus TCTGTACGGAGGTTTGTTGCAGAGTTCGAATCTCTCCATCTGCCTCTCAATCTCCTCATA
. : . : . : . : . : . :
JMSF026I10- AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
rJMSF026I10+ AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
rJMSF030B12+ AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
____________________________________________________________
consensus AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
. : . : . : . : . : . :
JMSF026I10- TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
rJMSF026I10+ TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
rJMSF030B12+ TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
____________________________________________________________
consensus TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
. : . : . : . : . : . :
JMSF026I10- GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
rJMSF026I10+ GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
rJMSF030B12+ GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
____________________________________________________________
consensus GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
. : . : . : . : . : . :
JMSF026I10- AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
rJMSF026I10+ AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
rJMSF030B12+ AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
____________________________________________________________
consensus AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
. : . : . : . : . : . :
JMSF026I10- TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
rJMSF026I10+ TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
rJMSF030B12+ TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
____________________________________________________________
consensus TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
. : . : . : . : . : . :
JMSF026I10- CTTGCTCAGANGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGT
rJMSF026I10+ CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
rJMSF030B12+ CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
____________________________________________________________
consensus CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
. : . : . : . : . : . :
rJMSF026I10+ GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCG
rJMSF030B12+ GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCGATTTAGCATTCTTT
____________________________________________________________
consensus GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCGATTTAGCATTCTTT
. : . : . : . : . : . :
rJMSF030B12+ TTGGCTTCTAAGCTTTTGAAGACGATCCCTCAGGCTGCATCGACAACTTGTTATGTTGCA
____________________________________________________________
consensus TTGGCTTCTAAGCTTTTGAAGACGATCCCTCAGGCTGCATCGACAACTTGTTATGTTGCA
. : . : . : . : . : . :
rJMSF030B12+ ACTGATCCGAGGCTTGCAAATGAAAGCGGGAAATTCTTCGCAGATTGCAACGAGATTTCT
____________________________________________________________
consensus ACTGATCCGAGGCTTGCAAATGAAAGCGGGAAATTCTTCGCAGATTGCAACGAGATTTCT
. : . : . : . : . : . :
rJMSF030B12+ ATTTCTTCCAAGTTTGGGTTCAGTTTAACAGAAAATGCAAGGTTGTGGCAGGCTTCTGAT
____________________________________________________________
consensus ATTTCTTCCAAGTTTGGGTTCAGTTTAACAGAAAATGCAAGGTTGTGGCAGGCTTCTGAT
. : . : . : . : . : . :
rJMSF030B12+ GTATTGGTTTCACCACACTCAAATCCATTCCAAGGCTTAGTGTAAAACCAAACAACATCG
____________________________________________________________
consensus GTATTGGTTTCACCACACTCAAATCCATTCCAAGGCTTAGTGTAAAACCAAACAACATCG