Contig 001379:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002C03Sequence254004441 (2)143001379 (2)
JMSF026C16Sequence111004441 (2)684001379 (2)gb|AAF74563.1|AF208544_17e-40heat stress transcription factor A3 [Solanum peruvianum]

Alignment

This contig is upended


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rJMSF026C16+                                              GGNAGGAGAAGAGAGTGATGATGC
                      ____________________________________________________________
consensus                                                 GGNAGGAGAAGAGAGTGATGATGC
 
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rJMSF026C16+          AGGAGGTGATTGAGNTGCAGCAGCAGCAGCGTGGCACGGTTCAGCACATGGAAGCAGTAA
                      ____________________________________________________________
consensus             AGGAGGTGATTGAGNTGCAGCAGCAGCAGCGTGGCACGGTTCAGCACATGGAAGCAGTAA
 
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rJMSF026C16+          ATGAGAAGTTGCAGGCTGCAGAGCAGAGGCAGAAGCAAATGGTTTCTTTCCTGGCTAAGG
                      ____________________________________________________________
consensus             ATGAGAAGTTGCAGGCTGCAGAGCAGAGGCAGAAGCAAATGGTTTCTTTCCTGGCTAAGG
 
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rJMSF026C16+          TGTTTCAGAATCCCAAAGTGTTGGCCCGGCTTCAGGAGCAAAGGACCATTGCAGCCTCTG
                      ____________________________________________________________
consensus             TGTTTCAGAATCCCAAAGTGTTGGCCCGGCTTCAGGAGCAAAGGACCATTGCAGCCTCTG
 
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rJMFF002C03+              AACAATGAAGAAGAAGTTTGTGAAGCATCAGCCACACAATAATCCCGAGCCTTCCA
rJMSF026C16+          CGAGAACAATGAAGAAGAAGTTTGTGAAGCATCAGCCACACAATAATCCCGAGCCTTCCA
                      ____________________________________________________________
consensus             CGAGAACAATGAAGAAGAAGTTTGTGAAGCATCAGCCACACAATAATCCCGAGCCTTCCA
 
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rJMFF002C03+          TGGAAGAAGGGCAGATTGTCAAGTACAANCCTCAAGTGGTGGAAGAAACAAATATGAGTA
rJMSF026C16+          TGGAAGAAGGGCAGATTGTCAAGTACAAGCCTCAAGTGGTGGAAGAAACAAATATGAGTA
                      ____________________________________________________________
consensus             TGGAAGAAGGGCAGATTGTCAAGTACAAGCCTCAAGTGGTGGAAGAAACAAATATGAGTA
 
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rJMFF002C03+          CAAGCATGCCAATGCCATTTTCAGA                                   
rJMSF026C16+          CAAGCATGCCAATGCCATTTTCAGATGAACATGAATACCTAGCTGAAGAAGAGGAGGGGG
                      ____________________________________________________________
consensus             CAAGCATGCCAATGCCATTTTCAGATGAACATGAATACCTAGCTGAAGAAGAGGAGGGGG
 
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rJMSF026C16+          TCTTCGGACTGGATCCTATATTCAAAGGGAAGAATGTTGCAAGTTCTCCACCACCCGAGT
                      ____________________________________________________________
consensus             TCTTCGGACTGGATCCTATATTCAAAGGGAAGAATGTTGCAAGTTCTCCACCACCCGAGT
 
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rJMSF026C16+          ACTTAGTTTCTTTCCCCGGCGACCAATGCGAATCAGGGAAGGAGAACAACATCCCAGAAT
                      ____________________________________________________________
consensus             ACTTAGTTTCTTTCCCCGGCGACCAATGCGAATCAGGGAAGGAGAACAACATCCCAGAAT
 
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rJMSF026C16+          TGGTTCCAGCAGAGCTAGAGAGTATTATGGTTAAAGAAGAGGAAATTTGGAATATGGGAT
                      ____________________________________________________________
consensus             TGGTTCCAGCAGAGCTAGAGAGTATTATGGTTAAAGAAGAGGAAATTTGGAATATGGGAT
 
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rJMSF026C16+          TTCAAGCTTCAGCTGGTATGCCAAGTTCTAGCCNTGAGTTGTGGGGCAATCTTGGGAGCA
                      ____________________________________________________________
consensus             TTCAAGCTTCAGCTGGTATGCCAAGTTCTAGCCNTGAGTTGTGGGGCAATCTTGGGAGCA
 
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rJMSF026C16+          GCTACACTGATATTGCAATTTCAGATANGTGGGATATTGATCCANNGCACACTACCACAA
                      ____________________________________________________________
consensus             GCTACACTGATATTGCAATTTCAGATANGTGGGATATTGATCCANNGCACACTACCACAA