| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012E21 | Sequence | 521 | 006368 (6) | ref|NP_001275147.1| | 6e-86 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 755 | 001374 (6) | ref|XP_009799382.1| | 3e-111 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMFF017L24 | Sequence | 565 | 006368 (6) | ref|NP_001275147.1| | 5e-79 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 775 | 001374 (6) | ref|XP_009799382.1| | 2e-100 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMFF022E13 | Sequence | 454 | 006368 (6) | ref|XP_009799382.1| | 3e-69 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 | 734 | 001374 (6) | ref|XP_009799382.1| | 6e-114 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMSF015N19 | Sequence | 495 | 006368 (6) | ref|XP_009599330.1| | 2e-62 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana tomentosiformis] ref|XP | 770 | 001374 (6) | ref|XP_009799382.1| | 2e-109 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMSF025J23 | Sequence | 685 | 006368 (6) | ref|NP_001275147.1| | 6e-104 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 785 | 001374 (6) | ref|XP_009799382.1| | 4e-97 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMSF029L12 | Sequence | 653 | 006631 (23) | gb|KDO66178.1| | 6e-87 | hypothetical protein CISIN_1g019915mg [Citrus sinensis] gb|KDO66179.1| hypotheti | 706 | 001374 (6) | ref|XP_009799382.1| | 2e-97 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
This contig is upended
. : . : . : . : . : . :
rJMFF012E21+ TTCTACCAGCTTCACTCATNGTCAT
____________________________________________________________
consensus TTCTACCAGCTTCACTCATNGTCAT
. : . : . : . : . : . :
rJMFF022E13+ GCTGCATACTTAGTTGGCTTTTTCTTNGGAAGAACTCCTTTGATCAAGTT
rJMFF012E21+ CAATGATATTGCTGCATACTTAGTTGGCTTTTTCTTTGGAAGAACTCCTTTGATCCAAGT
____________________________________________________________
consensus CAATGATATTGCTGCATACTTAGTTGGCTTTTTCTTTGGAAGAACTCCTTTGATCCAGTT
. : . : . : . : . : . :
rJMFF022E13+ GTCCCCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCTGTTTTGACTATGTTCTCTG
rJMFF012E21+ TGTCCCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCTGTTTTGACTATGTTCTCTG
rJMSF015N19+ GGAAGGTTTCATTGGAGCATCTGTTTNGACTATGTTCTCTG
rJMFF017L24+ CTG
____________________________________________________________
consensus TTTCCCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCTGTTTTGACTATGTTCTCTG
. : . : . : . : . : . :
rJMFF022E13+ CATTTTTGCTTGCAAATTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
rJMFF012E21+ CATTTTTGCTTGCAAATTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
rJMSF015N19+ CATTTTTGCTTGCAAATTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
rJMSF029L12+ TTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
rJMFF017L24+ CATTTTTGCTTGCAAATTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
rJMSF025J23+ TTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
____________________________________________________________
consensus CATTTTTGCTTGCAAATTTTTTTGGTCGTTTTCAATGGCTGACGTGCCCAAGGAAGGATT
. : . : . : . : . : . :
rJMFF022E13+ TATCAACTGGTTGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
rJMFF012E21+ TATCAACTGGTTGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
rJMSF015N19+ TATCAACTGGTTGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
rJMSF029L12+ TATCAACTGGTTGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
rJMFF017L24+ TATCAACTGGTTGGCTTCACTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
rJMSF025J23+ TATCAACTGGTNGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
____________________________________________________________
consensus TATCAACTGGTTGGCTTCATTGTGATCCTGGTCCTTTGTTTAAACCAGAACATTTCACTA
. : . : . : . : . : . :
rJMFF022E13+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
rJMFF012E21+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
rJMSF015N19+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
rJMSF029L12+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
rJMFF017L24+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
rJMSF025J23+ TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
____________________________________________________________
consensus TACCAGAGTGGATTCCTCAATGGTTTCCTAAGAGAGAGATTGAAATATTGCCAGTACAGT
. : . : . : . : . : . :
rJMFF022E13+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
rJMFF012E21+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
rJMSF015N19+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
rJMSF029L12+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
rJMFF017L24+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
rJMSF025J23+ GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
____________________________________________________________
consensus GGCATGCATTACTTCTTGGCCTATTTTCATCAATCATAGCTCCTTTTGGGGGCTTCTTTG
. : . : . : . : . : . :
rJMFF022E13+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
rJMFF012E21+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
rJMSF015N19+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
rJMSF029L12+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
rJMFF017L24+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATA
rJMSF025J23+ CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
____________________________________________________________
consensus CAAGTGGTTTTAAAAGGGCCTTCAAAGTCAAGGACTTTGGTGATAGTATTCCTGGGCATG
. : . : . : . : . : . :
rJMFF022E13+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
rJMFF012E21+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
rJMSF015N19+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
rJMSF029L12+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
rJMFF017L24+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
rJMSF025J23+ GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
____________________________________________________________
consensus GTGGCATCACTGATAGGATGGATTGCCAGATGGTGATGGCTGTTTTTGCATATATATATC
. : . : . : . : . : . :
rJMFF022E13+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
rJMFF012E21+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
rJMSF015N19+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
rJMSF029L12+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
rJMFF017L24+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
rJMSF025J23+ ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
____________________________________________________________
consensus ATCAGTCTTTCGTGGTGCCTCAGAACCTATCAATCGAGATGATCTTGGACCAGATATTAA
. : . : . : . : . : . :
rJMFF022E13+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
rJMFF012E21+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
rJMSF015N19+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
rJMSF029L12+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
rJMFF017L24+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
rJMSF025J23+ TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
____________________________________________________________
consensus TGAACCTTCCATTCGAGGACCAACTAGCGCTGTTCACAAAGCTGGGGCAGATCATCCAGG
. : . : . : . : . : . :
rJMFF022E13+ AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
rJMFF012E21+ AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
rJMSF015N19+ AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
rJMSF029L12+ AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
rJMFF017L24+ AAAGGCGGCTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
rJMSF025J23+ AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
____________________________________________________________
consensus AAAGGCGGTTTGCAGAATCTTGAGTATGCTAACGGACTTGTATTAATGATTTGACGTAGT
. : . : . : . : . : . :
rJMFF022E13+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
rJMFF012E21+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
rJMSF015N19+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
rJMSF029L12+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
rJMFF017L24+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
rJMSF025J23+ TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
____________________________________________________________
consensus TTATTTATTTACACACAGTGATTGTATATCTTAGTATTGGTTTGCAAGGGCTGTTTCTAA
. : . : . : . : . : . :
rJMFF022E13+ ACCTTAATA
rJMFF012E21+ ACCTTAATAG
rJMSF015N19+ ACCTTAATAGTTAGTGCTTTTTTTAGCTGCCTAAATCCTTGTCGTGCAGATTGTATA-GT
rJMSF029L12+ ACCTTAATAGTTAGTGCNTTTTTTAGCTGCCTAAATCCTTGTCGTGCAGATTGTATAGGT
rJMFF017L24+ ACCTTAATAGTTAGTGCTTTTTTTAGCTGCCTAAATCCTTGTCGTGCAGATTGTATA-GT
rJMSF025J23+ ACCTTAATAGTTAGTGCTTTTTTTAGCTGCCTAAATCCTTGTCGTGCAGATTGTATA-GT
____________________________________________________________
consensus ACCTTAATAGTTAGTGCTTTTTTTAGCTGCCTAAATCCTTGTCGTGCAGATTGTATA-GT
. : . : . : . : . : . :
rJMSF015N19+ GCATTAGTGCTTGATACCCCCATTGACTTTTTTGTTAGGTTGCTT
rJMSF029L12+ GCATTAGTGCTTGATACCCCCATTGACTTTTTTGTTAGGTTGCTT
rJMFF017L24+ GCATTAGTGCTTGATACCCCCATTGACTTTTTTGTTAGGTTGCTTTGACAGGACAGTAAA
rJMSF025J23+ GCATTAGTGCTTGATACCCCCATTGACTTTTTTGTTAGGTTGCTTTGACAGGACAGTAAA
____________________________________________________________
consensus GCATTAGTGCTTGATACCCCCATTGACTTTTTTGTTAGGTTGCTTTGACAGGACAGTAAA
. : . : . : . : . : . :
rJMFF017L24+ AACCCTTCAACTGTCATCACATTGCTCCAAATAAGCTTAGTACTACAAGAATC
rJMSF025J23+ AACCCTTCAACTGTCATCACATTGCTCCAAATAAGCTTAGTACTACAAGAATCCAACTCT
____________________________________________________________
consensus AACCCTTCAACTGTCATCACATTGCTCCAAATAAGCTTAGTACTACAAGAATCCAACTCT