Contig 001367:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008L09Sequence480006663 (4)ref|XP_008779264.1|8e-74PREDICTED: zinc finger CCCH domain-containing protein 40 [Phoenix dactylifera]755001367 (3)emb|CDO97607.1|2e-39unnamed protein product [Coffea canephora]
JMSF024H15Sequence671001367 (3)gb|ABB72821.1|5e-61RRM-containing RNA-binding protein-like protein [Solanum tuberosum]749001367 (3)emb|CDO97607.1|1e-38unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF024H15-                                 GAGTTGATGCAAGAATCACTGAGCAGGACCTTAGGGAT
                      ____________________________________________________________
consensus                                   GAGTTGATGCAAGAATCACTGAGCAGGACCTTAGGGAT
 
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JMSF024H15-           CAGTTTTATGCACATGGTGAAATTGAGTCCGTAAAAATGGTGTTGCAACGTGGATGTGCT
rJMSF008L09+                                                           GTGGATGTGCT
                      ____________________________________________________________
consensus             CAGTTTTATGCACATGGTGAAATTGAGTCCGTAAAAATGGTGTTGCAACGTGGATGTGCT
 
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JMSF024H15-           TTCGTAACATATACAACAAGGGAAGGTGCCGAGAGGGCAGCTGAGGAACTTGCAAACAAG
rJMSF008L09+          TTCGTAACATATACAACAAGGGAAGGTGCCGAGAGGGCAGCTGAGGAACTTGCAAACAAG
rJMSF024H15+                                         AGAGGGCAGCTGAGGAACTTGCAAACAAG
                      ____________________________________________________________
consensus             TTCGTAACATATACAACAAGGGAAGGTGCCGAGAGGGCAGCTGAGGAACTTGCAAACAAG
 
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JMSF024H15-           CTTGTAATAAAGGGCTTGCGGTTGAAATTACTGTGGGGAAGACCACAGGCACCAAAGCCT
rJMSF008L09+          CTTGTAATAAAGGGCTTGCGGTTGAAATTACTGTGGGGAAGACCACAGGCACCAAAGCCT
rJMSF024H15+          CTTGTAATAAAGGGCTTGCGGTTGAAATTACTGTGGGGAAGACCACAGGCACCAAAGCCT
                      ____________________________________________________________
consensus             CTTGTAATAAAGGGCTTGCGGTTGAAATTACTGTGGGGAAGACCACAGGCACCAAAGCCT
 
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JMSF024H15-           GAATCTGAGATGACCGATGAGTTGAGGCAGCAGGCGGCGGTGGCTCATAGTGGGTTGCTG
rJMSF008L09+          GAATCTGAGATGACCGATGAGTTGAGGCAGCAGGCGGCGGTGGCTCATAGTGGGTTGCTG
rJMSF024H15+          GAATCTGAGATGACCGATGAGTTGAGGCAGCAGGCGGCGGTGGCTCATAGTGGGTTGCTG
                      ____________________________________________________________
consensus             GAATCTGAGATGACCGATGAGTTGAGGCAGCAGGCGGCGGTGGCTCATAGTGGGTTGCTG
 
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JMSF024H15-           CCAAGGGCCGTCATATCACAGCAACAGAACCAGCCCGATAACCAAGATCAACCTCCATAC
rJMSF008L09+          CCAAGGGCCGTCATATCACAGCAACAGAACCAGCCCGATAACCAAGATCAACCTCCATAC
rJMSF024H15+          CCAAGGGCCGTCATATCACAGCAACAGAACCAGCCCGATAACCAAGATCAACCTCCATAC
                      ____________________________________________________________
consensus             CCAAGGGCCGTCATATCACAGCAACAGAACCAGCCCGATAACCAAGATCAACCTCCATAC
 
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JMSF024H15-           ATGCCTTACTTCAACATTCCGCATATGCCTCAGCCCGAGAGAGCGTTTTATCCTTCAATG
rJMSF008L09+          ATGCCTTACTTCAACATTCCGCATATGCCTCAGCCCGAGAGAGCGTTTTATCCTTCAATG
rJMSF024H15+          ATGCCTTACTTCAACATTCCGCATATGCCTCAGCCCGAGAGAGCGTTTTATCCTTCAATG
                      ____________________________________________________________
consensus             ATGCCTTACTTCAACATTCCGCATATGCCTCAGCCCGAGAGAGCGTTTTATCCTTCAATG
 
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JMSF024H15-           GATCCTCAAAGGATGGGAGCCCTTGTTTCTTCCCAAGATGGGAGTTCAAATGCTGGAGCT
rJMSF008L09+          GATCCTCAAAGGATGGGAGCCCTTGTTTCTTCCCAAGATGGGAGTTCAAATGCTGGAGCT
rJMSF024H15+          GATCCTCAAAGGATGGGAGCCCTTGTTTCTTCCCAAGATGGGAGTTCAAATGCTGGAGCT
                      ____________________________________________________________
consensus             GATCCTCAAAGGATGGGAGCCCTTGTTTCTTCCCAAGATGGGAGTTCAAATGCTGGAGCT
 
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JMSF024H15-           TCAGGATCAGGTGAAAATAGAAGTGGTCCTGACCAGCAACCACAAGGACAACATTTCGGT
rJMSF008L09+          TCAGGATCAGGTGAAAATAGAAGTGGTCCTGACCAGCAACCACAAGGACAACATTTCGGT
rJMSF024H15+          TCAGGATCAGGTGAAAATAGAAGTGGTCCTGACCAGCAACCACAAGGACAACATTTCGGT
                      ____________________________________________________________
consensus             TCAGGATCAGGTGAAAATAGAAGTGGTCCTGACCAGCAACCACAAGGACAACATTTCGGT
 
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JMSF024H15-           TATCCACCCGCCCCACAACAACCTCAAGGTCAATTTTACCGGCCTTATTATCCACCCATT
rJMSF008L09+          TATCCACCCGCCCCACAACAACCTCAAGGTCAATTTTACCGGCCTTATTATCCACCCATT
rJMSF024H15+          TATCCACCCGCCCCACAACAACCTCAAGGTCAATTTTACCGGCCTTATTATCCACCCATT
                      ____________________________________________________________
consensus             TATCCACCCGCCCCACAACAACCTCAAGGTCAATTTTACCGGCCTTATTATCCACCCATT
 
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JMSF024H15-           CCGCCCTATGGCTACATCCCTCCCCCTTCACCACCTTATCAGCAGTTTCCTCCACCACCC
rJMSF008L09+          CCGCCCTATGGCTACATCCCTCCCCCTTCACCACCTTATCAGCAGTTTCCTCCACCACCC
rJMSF024H15+          CCGCCCTATGGCTACATCCCTCCCCCTTCACCACCTTATCAGCAGTTTCCTCCACCACCC
                      ____________________________________________________________
consensus             CCGCCCTATGGCTACATCCCTCCCCCTTCACCACCTTATCAGCAGTTTCCTCCACCACCC
 
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JMSF024H15-           TACCAGGCTATGATCCCTCCACCGCCTCCCGGT                           
rJMSF008L09+          TACCAGGCTATGATCCCTCCACCGCCTCCCGGTGGCAACACAACAGGACATCAACCGCCA
rJMSF024H15+          TACCAGGCTATGATCCCTCCACCGCCTCCCGGTGGCAACACAACAGGACATCAACCGCCA
                      ____________________________________________________________
consensus             TACCAGGCTATGATCCCTCCACCGCCTCCCGGTGGCAACACAACAGGACATCAACCGCCA
 
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rJMSF008L09+          CACACCGGACCAGCTCAGCAAGGAACTGGACAACAAGATCCTGGACAGCAATTTTAGTTT
rJMSF024H15+          CACACCGGACCAGCTCAGCAAGGAACTGGACAACAAGATCCTGGACAGCAATTTTAGTTT
                      ____________________________________________________________
consensus             CACACCGGACCAGCTCAGCAAGGAACTGGACAACAAGATCCTGGACAGCAATTTTAGTTT
 
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rJMSF008L09+          CATTGGTATGGTCACATGTTTGGGACAAATATCTGCAGCTGAAAGCTTAAAACCATTGCT
rJMSF024H15+          CATTGGTATGGTCACATGTTTGGGACAAATATCTGCAGCTGAAAGCTTAAAACCATTGCT
                      ____________________________________________________________
consensus             CATTGGTATGGTCACATGTTTGGGACAAATATCTGCAGCTGAAAGCTTAAAACCATTGCT
 
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rJMSF008L09+          AGCTGCCAAAAGTTAAAATCTTTC                                    
rJMSF024H15+          AGCTGCCAAAAGTTAAAATCTTTCTGTGTTTTTCCATTCAATTAAATGAATAGATTCTGT
                      ____________________________________________________________
consensus             AGCTGCCAAAAGTTAAAATCTTTCTGTGTTTTTCCATTCAATTAAATGAATAGATTCTGT