Contig 001363:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023A11Sequence678007942 (5)ref|XP_009609977.1|1e-36PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]736001363 (2)ref|XP_009609977.1|2e-57PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]
JMSF031L01Sequence646007942 (5)ref|XP_009609977.1|1e-20PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]335001363 (2)ref|XP_006348364.1|4e-07PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Solanum tu

Alignment

This contig is upended


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rJMSF023A11+ CTCAGAAACCTTCACG
                      ____________________________________________________________
consensus CTCAGAAACCTTCACG
 
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rJMSF023A11+ ACCCGAGCAAATCAAAGCCGGTAACCATTTTGCATGCCCGGATCGATCTCGTGACCATAG
                      ____________________________________________________________
consensus ACCCGAGCAAATCAAAGCCGGTAACCATTTTGCATGCCCGGATCGATCTCGTGACCATAG
 
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rJMSF023A11+ ATTGAAGACGGGAGTGGATGTCATGAACCGCACTTCTGGTAGTGTCCTGAGAAATGCGAA
                      ____________________________________________________________
consensus ATTGAAGACGGGAGTGGATGTCATGAACCGCACTTCTGGTAGTGTCCTGAGAAATGCGAA
 
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rJMSF023A11+ TAGGAACAGACCGCCAATAATGGGAACGTATTCCGAGAACATGGAGATCTCGGATGCCAC
                      ____________________________________________________________
consensus TAGGAACAGACCGCCAATAATGGGAACGTATTCCGAGAACATGGAGATCTCGGATGCCAC
 
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rJMSF023A11+ CGCGAGTGACTGGTCCCTTTTCACGAGCTCCGATGAAGCATCCTTCACTACCGAGAGCAC
                      ____________________________________________________________
consensus CGCGAGTGACTGGTCCCTTTTCACGAGCTCCGATGAAGCATCCTTCACTACCGAGAGCAC
 
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rJMSF023A11+ CCGGGACTCTTTCAGTACGGTCGATTACGCTGATGCCAGCGCCCTCGACCCGTTCTCTTC
                      ____________________________________________________________
consensus CCGGGACTCTTTCAGTACGGTCGATTACGCTGATGCCAGCGCCCTCGACCCGTTCTCTTC
 
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rJMSF031L01+ GACTATAACTCGAAGAGAACAATCACGTGTAGCAT
rJMSF023A11+ GTTCATCAACACAATGTCTGCCCCGGACTATAACTCGAAGAGAACAATCACGTGTAGCAT
                      ____________________________________________________________
consensus GTTCATCAACACAATGTCTGCCCCGGACTATAACTCGAAGAGAACAATCACGTGTAGCAT
 
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rJMSF031L01+ GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTNGGAGAACAANGGGTTTGTCGTGGA
rJMSF023A11+ GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTCGGAGAACAAAGGGTTTGTCGTGGA
                      ____________________________________________________________
consensus GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTCGGAGAACAAAGGGTTTGTCGTGGA
 
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rJMSF031L01+ TTCACACCCCGGTAGNGTACAGGGAGGNGACGACGACNTGATGGAGNTTAGCTTTTCTCA
rJMSF023A11+ TTCACACCCCGGTAGTGTACAGGGAGGCGACGACGACCTGATGGAGGTTAGCTTTTCTCA
                      ____________________________________________________________
consensus TTCACACCCCGGTAGTGTACAGGGAGGCGACGACGACCTGATGGAGGTTAGCTTTTCTCA
 
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rJMSF031L01+ TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTANGAGTCTAGATATGT
rJMSF023A11+ TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTACGAGTCTAGATATGT
                      ____________________________________________________________
consensus TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTACGAGTCTAGATATGT
 
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rJMSF031L01+ AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTNAANCANTATTANATG
rJMSF023A11+ AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTAAATCATTATTATATG
                      ____________________________________________________________
consensus AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTAAATCATTATTATATG
 
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rJMSF031L01+ GGCAA
rJMSF023A11+ GGCAAGCTTAGTTAGGTAGAGAGAAGTGTAGAAGTTTAACTGGATGTGCCTCAAATTTTG
                      ____________________________________________________________
consensus GGCAAGCTTAGTTAGGTAGAGAGAAGTGTAGAAGTTTAACTGGATGTGCCTCAAATTTTG
 
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rJMSF023A11+ ATTTCTCAATATTTCATTGAATGGGGCACATTTATTGTGGCTTTTGAATCAACCTTTCTT
                      ____________________________________________________________
consensus ATTTCTCAATATTTCATTGAATGGGGCACATTTATTGTGGCTTTTGAATCAACCTTTCTT